PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231070.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 712aa    MW: 78954.2 Da    PI: 6.2618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231070.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.52.5e-1343477111374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+lLl+cAeav+++d+ la+++L +l+  ++p gd+mqR+a++fteAL+arl+   +++  ++a +p +  + ns e l+++++ ++++P++kf
  XP_008231070.1 347 LVHLLLACAEAVAKEDFMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLTAtlTTNPAASAPKPFSPFPPNSLEILKIYQIVYQACPYIKF 441
                     68****************************************************943333444444444444567******************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+++etg+ L+++A +l+vpfef++ v ++led
  XP_008231070.1 442 AHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA-VGEQLED 531
                     ********************************************************....***************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l++++++ + gEalaVn v +lhr++       ++  +vL ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+
  XP_008231070.1 532 LKPHMFNRRIGEALAVNTVNRLHRVP------GNYLGNVLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRA 620
                     *************************9......444557********************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e+ GFk+v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  XP_008231070.1 621 KVEQYIFAPEIRNIVACEGAERTERHERLEKWRKVMESKGFKSVALSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 711
                     ******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.369321691IPR005202Transcription factor GRAS
PfamPF035148.5E-132347711IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MMMNSLCGSM GSIKSEISCT SDLKPPSPNE STTMSISMSE SKKSTTPPSS EMEQSSLTPP  60
SLNFPTLKFE LDGDVEVQSP DHSIWESLFS EQFDTDFMVL SPVPNNMPDS PQPGASLSAA  120
HNNYNYNYAQ SMQGQSLSGC SPPRFSPHLG AFSSTHNPKG KGLSPLRRVF NSPVNQYMQP  180
ADQNMQSMPP ASIEDFLDDY QRDSFIAAYQ NPTTTTTTSS SKMSGTSSQS YNPHDMPTSS  240
TVPAAPLDCL PMQNSSRFSR SVSETSLVTA GNSQMTQESR ASAYRQMGSN CGAPLSQQLQ  300
RERQQEKQQQ QQPLMHPIKH QLHQNLNYMA PNLPMALEQE QDSGLQLVHL LLACAEAVAK  360
EDFMLARRYL HHLNRVVTPL GDSMQRVASC FTEALSARLT ATLTTNPAAS APKPFSPFPP  420
NSLEILKIYQ IVYQACPYIK FAHFTANQAI FEAFESEERV HVIDLDILQG YQWPAFMQAL  480
AARPGGAPFL RITGVGPCIE AVKETGRCLT ELALSLHVPF EFHAVGEQLE DLKPHMFNRR  540
IGEALAVNTV NRLHRVPGNY LGNVLAMIRD QAPNIVTLVE QEASHNGPYF LGRFLEALHY  600
YSAIFDSLDA TFPPDSAQRA KVEQYIFAPE IRNIVACEGA ERTERHERLE KWRKVMESKG  660
FKSVALSANA VTQSKILLGL YSCDGYRMTE DKGCLLLGWQ DRSIMAASAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-983307101377Protein SCARECROW
5b3h_D3e-983307101377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231070.10.0PREDICTED: DELLA protein GAI-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLM5WZR20.0M5WZR2_PRUPE; Uncharacterized protein
STRINGXP_008231070.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-96RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]