PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008231061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27188.6 Da PI: 10.0212 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.3 | 3.7e-37 | 15 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +p+G+rFhPtdeelv +yLk+kv++ +l++ ++i+++d+++++Pw Lp + +++ yfF ++ ++++ + ++ra+ gyWk gk+k++++ XP_008231061.1 15 MPVGYRFHPTDEELVIHYLKRKVHAAPLPA-SIIPDFDVFHTHPWGLPGCGGDVREKRYFFYNKINANE-IDDTKRAAGCGYWKPMGKEKQIVDP 107 699***************************.89***************654444456699999888765.67899999***************99 PP NAM 96 .kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 ++e+vg++ktLvf + +++ +kt+W+mhey+l XP_008231061.1 108 eSSEAVGIRKTLVFSqrkRRYHETQTKTRWLMHEYQL 144 67888**********54323345667*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-42 | 11 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.868 | 15 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-24 | 16 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEKLPNFVIN GGVKMPVGYR FHPTDEELVI HYLKRKVHAA PLPASIIPDF DVFHTHPWGL 60 PGCGGDVREK RYFFYNKINA NEIDDTKRAA GCGYWKPMGK EKQIVDPESS EAVGIRKTLV 120 FSQRKRRYHE TQTKTRWLMH EYQLLSSQVN PTHTQASKRE PGNWVVYRVF QRKRKPQRSS 180 DIIPQPSNSK RTRTQRLVEV ITPSSSSSCS SDITHLSSNA NRLDHDQEEN SSAAADN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-23 | 13 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-23 | 13 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-23 | 13 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-23 | 13 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-23 | 13 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-23 | 13 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-23 | 13 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-23 | 13 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-23 | 13 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-23 | 13 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-23 | 13 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-23 | 13 | 178 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-23 | 13 | 178 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-23 | 13 | 178 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008231061.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008231061.1 | 1e-180 | PREDICTED: NAC domain-containing protein 41 | ||||
TrEMBL | M5X883 | 1e-164 | M5X883_PRUPE; Uncharacterized protein | ||||
STRING | XP_008231061.1 | 1e-180 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 1e-43 | NAC domain containing protein 84 |