PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230999.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 529aa    MW: 59336.1 Da    PI: 8.4814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230999.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055325123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+Fs+   L  H+r H
  XP_008230999.1  3 HRCKLCNKTFSSGKVLGGHMRGH 25
                    79******************988 PP
2zf-C2H211.40.00180100323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk+F +   +  H+r H
  XP_008230999.1  80 CKVCGKRFDSMKAMFGHMRHH 100
                     *******************99 PP
3zf-C2H216.52.4e-05111131323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+dCgk F +   L+ H + H
  XP_008230999.1 111 CKDCGKAFESLRALTAHTKIH 131
                     99****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.56E-9325No hitNo description
SMARTSM003550.036325IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-8325IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055330IPR007087Zinc finger, C2H2
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
SuperFamilySSF576676.56E-973100No hitNo description
SMARTSM003550.4478100IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9378105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
PfamPF139121.7E-680102IPR007087Zinc finger, C2H2
SMARTSM003550.12109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429109136IPR007087Zinc finger, C2H2
PfamPF139129.2E-4110133IPR007087Zinc finger, C2H2
PROSITE patternPS000280110131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-9110131No hitNo description
Gene3DG3DSA:3.30.160.602.2E-4111132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.71E-9358385No hitNo description
Gene3DG3DSA:3.30.160.609.3E-4362395IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.616363390IPR007087Zinc finger, C2H2
SMARTSM003550.52363385IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-5363386IPR007087Zinc finger, C2H2
PROSITE patternPS000280365385IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-5441469No hitNo description
PfamPF139122.4E-10443466IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99444471IPR007087Zinc finger, C2H2
SMARTSM003550.16444466IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280446466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEHRCKLCNK TFSSGKVLGG HMRGHGTKNS AKAEKKLKVS TVDFEGDDDE HAGYGLRVNP  60
KKSWKFSGSK VQASEKESLC KVCGKRFDSM KAMFGHMRHH SSRERKETQC CKDCGKAFES  120
LRALTAHTKI HSKRLRTSDG SQSISSEKLF VDFQYSTETM GLIRRKRSKR LRYKITPSSS  180
SSGMNESKYA TEFGQEVVDG AICLMIISRG GSNWGRISSV TESSDNNSLS LEVQSPVQKN  240
RIMGNRGGIS VCNDTGNKIF EFGENDSGFA SDEEKIGKLE VPIDRFYRGA ECKRPKLDED  300
SAFVGYDAEI EKESHGEMEA ILTEVELDVD IMKSGMKACD SGNNMLYGTE SEIFADSRKK  360
REHKCRTCKK LFRSHQALGG HQRVHKATNN CSGEKIEDSE DKILINKLSK IEYSCKLAKL  420
ECTDNSEEQE MERATVTGFE RKVHRCSICL KVFATGQALG GHKRVHFGKD SGAGTEQTRA  480
LKQQISEICD VFELSQPVKL EEENGDVEFK SWWLGNEHKR ELLVGLMPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230999.10.0PREDICTED: zinc finger protein 197
TrEMBLM5WW110.0M5WW11_PRUPE; Uncharacterized protein
STRINGXP_008230999.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-18C2H2-like zinc finger protein