PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008230794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 40210 Da PI: 7.0925 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.5 | 4.3e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp k+k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_008230794.1 16 LPPGFRFHPTDEELISHYLSPKVLDSCFCA-RAIGEVDLNKCEPWDLPWKAKMGEREWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIYK- 108 79************************9888.89***************888999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfykgrapkgekt+Wvmheyrle XP_008230794.1 109 AKTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-64 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.459 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-30 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MENAYGFSKE DEQMELPPGF RFHPTDEELI SHYLSPKVLD SCFCARAIGE VDLNKCEPWD 60 LPWKAKMGER EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIYKAK TLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTAKNEWVI CRIFQKSSGG KKTHISGLVR 180 LGSFGNELRP SLLPPLMDSS PYNSDTRTTV CETSHVSFSD PMEDQRTQDD IIDSFQHNNH 240 HNSSNSNHNP LLASSSRSNP SAHLNPFYSN QITPNIGFLQ HQDSLLMQDQ SFLRMLLDNQ 300 APNLRRSAKT ELSQDTGLSM DVSSVVSNRE MVQDDPSYSS APIEYDSLWN Y |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-54 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008230794.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR822711 | 0.0 | KR822711.1 Prunus persica NAC transcription factor NAC4 (NAC4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230794.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-139 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0P0K449 | 0.0 | A0A0P0K449_PRUPE; NAC transcription factor NAC4 | ||||
STRING | XP_008230794.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-131 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
---|---|---|---|
|