PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230624.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 320aa    MW: 36224.7 Da    PI: 4.7184
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230624.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.86e-2177130356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  XP_008230624.1  77 KKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 130
                     5678*************************************************9 PP
2HD-ZIP_I/II135.22.3e-4376167192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ +qv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++e+ 
  XP_008230624.1  76 EKKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSNYDSILKENHKLKSEVV 167
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.96172132IPR001356Homeobox domain
SMARTSM003891.5E-2075136IPR001356Homeobox domain
CDDcd000866.96E-2077133No hitNo description
SuperFamilySSF466894.15E-2077143IPR009057Homeodomain-like
PfamPF000463.5E-1877130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-2278139IPR009057Homeodomain-like
PRINTSPR000315.2E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000315.2E-6112128IPR000047Helix-turn-helix motif
PfamPF021833.0E-16132173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEPCRFFFDP STTSSACQQG GGNMLFLGNA DHVFRGPRSV MGLMDQESSR RRSFFSSSSS  60
QDELFDEEYY DEQLPEKKRR LTPDQVHMLE KSFETENKLE PERKTQLAKK LGLQPRQVAV  120
WFQNRRARWK TKQLERDYDL LKSSYDSLLS NYDSILKENH KLKSEVVSIN QKLEAKEETS  180
NIKAAAFAPD HADDDKCDPL VPAGDEMRDA VPISYAAGLQ YSCSVKVEDR LSSGSGGSAV  240
VDEVEGPQLV DSGDSYNFLN EDNVHNNYPH HHHHHHSGIN SEEDDGSDDG RGYFSDVFAA  300
AVEEQVQQAE GVSMGWWVWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230624.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022835e-84HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A251Q6T30.0A0A251Q6T3_PRUPE; Uncharacterized protein
STRINGXP_008230624.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-59homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]