PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008230525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 20963.7 Da PI: 8.5901 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 228.8 | 1.4e-70 | 6 | 162 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +sl +vvtvrCGhC++llsvn+ + q a + ++ ++++ ++e+ ++ +++s++ s+ + XP_008230525.1 6 MASERVCYVHCNFCNTILAVSVPCNSLQNVVTVRCGHCANLLSVNMGASLQSNALAPQ------DP--QKMHLSSEDSNKSCGSSSSSKCSKFGH 92 579******************************************9998887776665......22..222222223333333333333333334 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ e ++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_008230525.1 93 PFESVELHDQPRISP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 162 456778888899888.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-72 | 7 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.31E-8 | 104 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.9E-5 | 110 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSMDLMASER VCYVHCNFCN TILAVSVPCN SLQNVVTVRC GHCANLLSVN MGASLQSNAL 60 APQDPQKMHL SSEDSNKSCG SSSSSKCSKF GHPFESVELH DQPRISPIRP PEKRQRVPSA 120 YNRFIKEEIQ RIKASNPDIS HREAFSTAAK NWAHFPHIHF GLKLDGSKQP KPDQTFAGGD 180 QGTQKSSGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008230525.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230525.1 | 1e-141 | PREDICTED: putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 5e-76 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A251NQJ7 | 1e-118 | A0A251NQJ7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230517.1 | 1e-126 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-72 | YABBY family protein |
Publications ? help Back to Top | |||
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