PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230304.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 655aa    MW: 71993.1 Da    PI: 7.7372
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230304.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093714081954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  XP_008230304.1 371 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 408
                     554459******************************88 PP
2BELL119.12e-38235306172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +rqelq+kkakL+s+l+eV++rY+qy++q+q vi sFe++ag gsak+Yt+lAl++iS++FrcLkdai+ qi
  XP_008230304.1 235 QRQELQMKKAKLVSMLDEVEQRYRQYHQQMQFVITSFEQAAGFGSAKSYTHLALQTISKQFRCLKDAISAQI 306
                     69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.4E-61165304IPR006563POX domain
PfamPF075263.1E-48170303IPR006563POX domain
PROSITE profilePS5007112.066349412IPR001356Homeobox domain
SMARTSM003897.8E-10352416IPR001356Homeobox domain
CDDcd000861.60E-12352413No hitNo description
SuperFamilySSF466894.71E-17353419IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28355418IPR009057Homeodomain-like
PfamPF059204.4E-18369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MATFFHHGSS EIQAPTDHAL QTLYLMNPNY VPSFSDSAQQ NPTPPSMLLF NHTPPPTTHH  60
LVGIPLHSAA VGSNNSDDHS PPSLHHQTDP SRLHYNLWGP MGGQTPIGAS AVSPTSATTQ  120
QGLSLSLSTH QQPGYNSNYR PSSFPAERDV PDKGTSLSSV SAISHGFSGV LLGSKYLKAA  180
QELLDEVVHV GKGSNAAELD GGIKDKMKVS RETTAGIGAS SSGGAKQGAE LNTAQRQELQ  240
MKKAKLVSML DEVEQRYRQY HQQMQFVITS FEQAAGFGSA KSYTHLALQT ISKQFRCLKD  300
AISAQIKAGS KNLGEEECLG AKIEGSRLKY IDNHVRQQRA LQQLGMVQHN PWRPQRGLPE  360
RAVSVLRAWL FEHFLHPYPK DSDKVMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYVE  420
ETKEQEKNGS GNNANYKESG STTPRESAST RIDDQMFRST HENFSNQHPS PNEKSNNSSL  480
SASPMAGSLQ SQSGFNLVGM SNMQGSPKKR KSSEIENSPS SILSVDADMK ANETNREITA  540
DHANGFGTYP IPEIGRFDMN PEHLAQRFHG NGVSLTLGLP HRENSSLSGT QQSFLSNHGQ  600
INIHDQLGRR FNTGGEADFC AINHPQPSHS GIDYEDMDMR SRKRFAAQLL PDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16358416563Homeobox protein Meis2
3k2a_B3e-16358416563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230304.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230296.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_008230304.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLM5WRB50.0M5WRB5_PRUPE; Uncharacterized protein
STRINGXP_008230296.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-141BEL1-like homeodomain 1