PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230038.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 522aa    MW: 56379.5 Da    PI: 6.0066
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230038.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-163481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++vk++G g+W+++ +  g+ R++k+c++rw ++l
   XP_008230038.1 34 KGPWTAAEDGILMEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 81
                     79******************************************9986 PP
2Myb_DNA-binding44.43.9e-1487130146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ +++E+ l++++++++G++ W++ a+ ++ gRt++++k++w++
   XP_008230038.1  87 KGSLSPDEERLIIELHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 130
                      57789*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-232684IPR009057Homeodomain-like
PROSITE profilePS5129415.8542981IPR017930Myb domain
SuperFamilySSF466892.66E-2931128IPR009057Homeodomain-like
SMARTSM007175.4E-123383IPR001005SANT/Myb domain
PfamPF002492.4E-143481IPR001005SANT/Myb domain
CDDcd001673.91E-103681No hitNo description
PROSITE profilePS5129424.682136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2385135IPR009057Homeodomain-like
SMARTSM007179.4E-1586134IPR001005SANT/Myb domain
PfamPF002492.4E-1387130IPR001005SANT/Myb domain
CDDcd001674.51E-1191130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MMLNSSGVDG VHEAEEAAQR GGSHHNHQQR GLKKGPWTAA EDGILMEYVK KHGEGNWNAV  60
QKNSGLARCG KSCRLRWANH LRPNLKKGSL SPDEERLIIE LHAKFGNKWA RMASQLPGRT  120
DNEIKNYWNT RIKRRQRAGL PVYPHDLQPE ATAAAFHHHQ MRHSSPSSSS ASSFSSLLSN  180
SQLRKPSTYS PAQLSLYDHI TTFSSSSDHH NNHTNNYHRN AASLFSNPIT QFNGNGGGFA  240
MPFGSSSSSA LFNQSHNIPN PNPFGSSSAT PPPLHHQYNS HGGFGGYNNL SLSSIIMGPP  300
SYDSTAGLVA GSNAELPSNQ TPPSIHGDEA PMGASGNTNE DDRYEIAPVP SQGNSGLLDD  360
VLAEAHNISN KRLKSEDSSG VSGKEKGVVV VEEESNEEEE DDTVQVESTL KNSGDNSAEN  420
QRDDSSSPSS IDMKQSEDPL DEMDDDLLSL LNFSSTVPAV SETSWYLAEC MSNGGSSASE  480
NVGLDTRQNA PLTLTSVKTT AAAPEVQRTL GACYWNNMPG IC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30321355107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230038.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A251Q3P60.0A0A251Q3P6_PRUPE; Uncharacterized protein
STRINGXP_008230038.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.27e-74myb domain protein 101