PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008229554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 187aa MW: 22018.8 Da PI: 8.2029 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.7 | 4.4e-27 | 11 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratksgyWka 85 +ppG++F P++eel+ +yL++kv+g++++ e++ + ++++y+ +P+++ + + ++++yfF++ ++k+++g+r +r++ g+Wk XP_008229554.1 11 VPPGYHFYPSEEELLLYYLRPKVNGEEVPGENHvVFDFNLYSDQPRKIWDhfqttR--QndlkMSNDLYFFTELQTKTTNGSRVSRTAGGGTWKG 103 69*************************88876659999**********63244331..2223233477**************************9 PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++ +++++g+kk + + ++ ++e+ +W+mhe++l XP_008229554.1 104 EDGGKKIYAPgTDHVIGIKKRFRYE--NKGSAEHGRWLMHEFEL 145 9999****9977788********98..44555678*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-31 | 8 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.27 | 11 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-19 | 12 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MAEDGYAYDR VPPGYHFYPS EEELLLYYLR PKVNGEEVPG ENHVVFDFNL YSDQPRKIWD 60 HFQTTRQNDL KMSNDLYFFT ELQTKTTNGS RVSRTAGGGT WKGEDGGKKI YAPGTDHVIG 120 IKKRFRYENK GSAEHGRWLM HEFELGQSLI HNRQAKKYVL CLLRKKEEPE KKRKEPEEED 180 RRQVLCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-15 | 11 | 172 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-15 | 11 | 172 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-15 | 11 | 172 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-15 | 11 | 172 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-15 | 11 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-15 | 11 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-15 | 11 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-15 | 11 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-15 | 11 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-15 | 11 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-15 | 11 | 172 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-15 | 11 | 172 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-15 | 11 | 172 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-15 | 11 | 172 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008229554.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008229554.1 | 1e-139 | PREDICTED: NAC domain-containing protein 43-like | ||||
TrEMBL | M5W7Q2 | 1e-116 | M5W7Q2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229554.1 | 1e-138 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 6e-11 | NAC family protein |