PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008229426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 367aa MW: 41607.7 Da PI: 7.5786 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106 | 1.9e-33 | 195 | 252 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+Hnh+ XP_008229426.1 195 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCVVKKRVERSFQDPSIVITTYEGQHNHQ 252 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-34 | 179 | 254 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-29 | 187 | 254 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.019 | 189 | 254 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-39 | 194 | 253 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-26 | 195 | 252 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MSNEKKNPYQ YDPFDYNPHE INRSSFPFFN YGTPSIQDPQ NLHGFESDHP NSSFMSFTDC 60 LHGSMDYNTL SRAFDMSCSS SEVISPQLDH ENSKNQQAAA AAGVGDHSVG TSTTENPSTP 120 NSSVSSSSNE GAGSHEHEDS EKKKKEKQPK VAVCDEAAGD EEDKSKKGSK AKKKEKRQRE 180 PRFAFLTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTQKCVVKKR VERSFQDPSI 240 VITTYEGQHN HQCPATLRGN LNLNAVGMLS PNSLLTSASL NGSARFQHEF LTQFLPMNNQ 300 LQLQLQSHHH QDDHQASNSM IYSNLVAPRP HHHQQQHQRQ HQRQQLHVPD YGLLQDLVPS 360 FGHKQEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-29 | 187 | 255 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-29 | 187 | 255 | 10 | 78 | Probable WRKY transcription factor 4 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 178 | KEKRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008229426.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008229426.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | M5XJ16 | 0.0 | M5XJ16_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229426.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 9e-49 | WRKY DNA-binding protein 28 |