PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228498.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 397aa    MW: 44356.2 Da    PI: 4.3458
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228498.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.53.1e-2491411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     +p Gf+FhP+d+el+ +yL +kv g+++  ++v++e+++y k ePwd+ +    +  ++ +++yfF+k +  + +g+r  r++ +g+Wk   + +
  XP_008228498.1   9 VPIGFKFHPSDDELLRYYLLNKVCGTPFMYSNVVPEFNLYgKKEPWDIWNdfgeQKLEKGEDLYFFTKLKLVTGKGSRVARTIGNGTWKGEDRGT 103
                     589************************99999******99456*****743444222356688**************************888888 PP

             NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v +   k+   gl k + + +  +++ ++  W+mhey+l
  XP_008228498.1 104 MVGDPakKNMPLGLCKRFRYEN--DKSDQHGCWIMHEYSL 141
                     8877654556699999999974..4444699*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-315168IPR003441NAC domain
PROSITE profilePS5100530.3639169IPR003441NAC domain
PfamPF023651.9E-1710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAPCEYVDVP IGFKFHPSDD ELLRYYLLNK VCGTPFMYSN VVPEFNLYGK KEPWDIWNDF  60
GEQKLEKGED LYFFTKLKLV TGKGSRVART IGNGTWKGED RGTMVGDPAK KNMPLGLCKR  120
FRYENDKSDQ HGCWIMHEYS LHPSLVKPHS NSNTCGGDGK YVLCRIRKND RKRKLSENDG  180
VGGHALVLQS PTKILRQLEN SEEVVLGANF TPISEASEVN YHYNQQPEQT SSAYLPMNQP  240
QDYGFELISD TDHQPAQGFN YDLSQSLDDD DVDALMKDLS NLDNIQPLAA QPLGGGSRPY  300
PSIIQESAVD EDSGNFNSGF GISSEDQTGG ELGTENVQLN VLGFPVHDNE MLDFLNRASF  360
DDLVDMIQFD DNDDELQAFA TSQSVMGMES TTTAATC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-14716613165Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228498.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8934100.0KT893410.1 Prunus persica cultivar Xiaobaitao NAC78 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228498.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A314Z4270.0A0A314Z427_PRUYE; Protein CUP-SHAPED COTYLEDON 1-like
STRINGXP_008228498.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.17e-19NAC domain containing protein 86