PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228438.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 322aa    MW: 35101.8 Da    PI: 6.3703
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228438.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.1e-17216250135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_008228438.1 216 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 250
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.5E-8615301IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-16210260IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347210246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-14211247IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.47E-14211273No hitNo description
CDDcd002023.58E-13215262No hitNo description
PROSITE patternPS003440216241IPR000679Zinc finger, GATA-type
PfamPF003207.7E-15216250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELPEFYLGG YFDAGAADFL PEKKPAAGDQ FTVDDLLDFS NEDALVADGG FLDAAADSSA  60
VTAVDSCNSS VSGGEPQFSG NRSFGDSQFS GDLCVPHDDL AELEWLSNFV EDSFSAEKDL  120
QALQFLSVTT TKPQTPETSS SSETNQNAPL FHSETPLPGK ARSKRSRAAP GDWSTRLLHL  180
ITPNDTIKPP KMTTCKKKDG IGGNSNSGSD SSGRKCLHCA AEKTPQWRTG PMGPKTLCNA  240
CGVRYKSGRL VPEYRPAASP TFVSARHSNS HRKVLELRRQ KEVHRSHQHQ FLSQSSFFGV  300
SNGGHDEYLI PHHNVNDFRQ MM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228438.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826327e-82GATA9_ARATH; GATA transcription factor 9
TrEMBLM5WXU80.0M5WXU8_PRUPE; GATA transcription factor
STRINGXP_008228438.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-70GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]