PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228148.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 367aa    MW: 39861.6 Da    PI: 10.1519
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228148.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.45.9e-1671158186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Liea  e+  +l+rg+lk+++W+ev++++      ++  ++ +qCk++++ ++k+yk +k  +  +  +  s++p+f++l+
  XP_008228148.1  71 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMAAG--GGPSKWPFFERLD 158
                     7*************************************85444455566778********************997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2669160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEDDEIQSP ASGRSGSPES PRQNGRITVT VAVPSAQIPA PASQPQSKGL TLALPSQGQQ  60
GRSSGGGRED CWSEGATAVL IEAWGERYLE LSRGNLKQKH WKEVADVVSS REDYGKTPKT  120
DIQCKNRIDT VKKKYKLEKS KMAAGGGPSK WPFFERLDHL IGPSSAAKVG PGSGGGGGFL  180
AHNQKVPMGM PVGVRPGQYF GQRDSKREVK IRPRSLVDWD SDESGELSPF SIDNEVFERK  240
RRRRTVLPEA NVNNAGGVGK GGTGTKDGGV GREKGGGGWG SSVRELTRAI MKFGEAYEHA  300
ETAKLQQVVE MEKQRMKFAK ELELQRMQFF MKTQVEISQL KHGGGRRSGN GNAGNHHSNN  360
NNSDCSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238242RKRRR
2238244RKRRRRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228148.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228148.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG83e-93ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A251PUR40.0A0A251PUR4_PRUPE; Uncharacterized protein
STRINGXP_008228148.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-54sequence-specific DNA binding transcription factors