PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227838.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 321aa    MW: 35652.7 Da    PI: 6.9824
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227838.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.62.9e-34166223259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCts+ C+vkk+vers +dp++v++tYeg+H+h+
  XP_008227838.1 166 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTACNVKKRVERSFNDPSIVVTTYEGQHTHP 223
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381309.6E-1121321IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.803.1E-35150225IPR003657WRKY domain
SuperFamilySSF1182901.57E-29157225IPR003657WRKY domain
PROSITE profilePS5081131.869160225IPR003657WRKY domain
SMARTSM007741.3E-40165224IPR003657WRKY domain
PfamPF031067.5E-27166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDVKKDVVKM EDNSTNIGCG FSSSPFSGIF DFCEGEKSSS LGFMELLGAG QDFCTNSLFD  60
YLPQTPSMLP SLAPNFPNTS IMAKECSDYS LNQQPATPNS SSISSASSEA LNEEQTDNKG  120
AADQDEEEER DQPKTKKELK AKKASQKRQR EPRFAFMTKS EVDHLEDGYR WRKYGQKAVK  180
NSPFPRSYYR CTSTACNVKK RVERSFNDPS IVVTTYEGQH THPSPLIPRP TLTASASAQP  240
NISTTFAMPS MPRTLLSHHY QQQLQPFNFC NYVNGGSPTA NASGTGFHHE RRFCTPATGS  300
AMLTDHGLLQ DIVPSHMLKQ E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-261582251077Probable WRKY transcription factor 4
2lex_A5e-261582251077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129111e-113JX112911.1 Malus hupehensis WRKY transcription factor 23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227838.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229002e-72WRK23_ARATH; WRKY transcription factor 23
TrEMBLM5X9R30.0M5X9R3_PRUPE; WRKY transcription factor
STRINGXP_008227838.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-65WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]