PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227307.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 702aa    MW: 76833.7 Da    PI: 6.1207
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227307.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07303323526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C ++++ GtCk+Gd C +aHg
  XP_008227307.1 303 PCLDYRK-GTCKRGDLCEYAHG 323
                     6999***.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.7E-1744184IPR020683Ankyrin repeat-containing domain
PfamPF127962.2E-981153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.59285192IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001985115IPR002110Ankyrin repeat
SuperFamilySSF484031.12E-1585164IPR020683Ankyrin repeat-containing domain
CDDcd002042.31E-1587193No hitNo description
SMARTSM002489.7E-4120152IPR002110Ankyrin repeat
PROSITE profilePS5008811.14120155IPR002110Ankyrin repeat
SMARTSM003567.4E-4298324IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5303323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.436303325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4331362IPR000571Zinc finger, CCCH-type
SMARTSM0035677333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MCGVLEQLSP ESPVPLSSQE TESVNKPMAN PIKVLETEHS FCSLLELAAD NDVEGFKQSI  60
SEASIVNEIG LWYGRDRASR RMVLEHRTPL MVASKYGSVD VVKLILSLSE ADVNCSPCGD  120
KSTALHCAAS GGSENAVDTV KVLLLAGADP NAIDANGCCP FDVIVSPLNC SNLKVVLQEL  180
LQYDGSACQL DLHVSNVCCR SSSPSLSSSP KNASLPSSIP DSTCNSDDIH VSSAPEKKEY  240
PFDPSLPNIK NSIYATDEFR MFSFKIWPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS  300
CMPCLDYRKG TCKRGDLCEY AHGVFECWLH PAQYKTRLCK DGMSCLRQVC FFAHKPEEMR  360
PVYVSTGSAM PSPHSATSAA AFMDMAAALN LLPGSPKAVQ AMLPSPFSPP ISPGNGISDS  420
CMAWPQKNIP SLHLPESNLR ASRLRSSLNA RDIPTEEVDL LHNFELQQQQ PLHDVSSFSQ  480
SFINISSVSH PLHPETLTPS NLNELFSAQV SSPRMTDHLV NSYGFSPSNK PAVRNQLQQQ  540
QTILSPIRTN AFSPRTFEQN LLQAPFDFSS PRMMSHKSIE PLSPIGSRVS ALAQHEKQKL  600
QQLYSFSARD VGSNVPRELG SNGAVGSPVP SLSKWESANG KLDWSVQTDE LGHLTKFCSG  660
EHNVEEPDVS WVQSLVKESP YDVKAVASAP ESGTLLSIDC SN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227307.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227307.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A251PQI20.0A0A251PQI2_PRUPE; Uncharacterized protein
STRINGXP_008227307.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2044534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain