PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008227161.2

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YB

Protein Properties

Length: 270aa MW: 29266.5 Da PI: 5.7359

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008227161.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	160.6	2.4e-50	82	176	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqd+++Pianv+rim+++lP +akis+daket+qecvse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl+++l+k+re e+ XP_008227161.2 82 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETIQECVSEYIAFITGEANERCQREQRKTVTAEDILWAMGKLGFDNYVEPLTLFLQKHRESEN 176 69******************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.0E-48	78	181	IPR009072	Histone-fold
SuperFamily	SSF47113	8.38E-36	85	181	IPR009072	Histone-fold
Pfam	PF00808	3.9E-25	88	152	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.8E-16	116	134	No hit	No description
PRINTS	PR00615	3.8E-16	135	153	No hit	No description
PRINTS	PR00615	3.8E-16	154	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MTNMESSEFR KYAPSNQNQD LEKGNSGKLT HRPVTPAQVN NSERSNSKAP INATPAATNS 60 NAAAAVANAG DPAQLTPQQS VVREQDQYMP IANVIRIMRR ILPPHAKISD DAKETIQECV 120 SEYIAFITGE ANERCQREQR KTVTAEDILW AMGKLGFDNY VEPLTLFLQK HRESENSDRS 180 TLRAEFMKRD RAVDFGSAGP PIALMPPPPP YGPGYPFGPQ HGPGMFDPSM LGMFRDGSSS 240 GSGGGAGSSS ASGDQGQNSL EGFDPFAQFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-57	82	173	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008227161.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008227161.2	0.0	PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A251PQ93	1e-127	A0A251PQ93_PRUPE; Uncharacterized protein
STRING	EMJ15921	1e-111	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2728	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	2e-59	NF-YB family protein