PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227085.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 363aa    MW: 41319.8 Da    PI: 4.6562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227085.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.42.3e-2281341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     lp+Gf FhP+d++l+ +yL++kv+gk+++    ++++++y + ePw++ k + +      +++yfF++ ++   +g+r +r++ +g W+   + k
  XP_008227085.1   8 LPVGFYFHPKDSDLLGYYLHNKVSGKPMKY--EVPKINLYGTsEPWKIWKDFGGdgleIGEDLYFFTTLKT---KGTRVSRKAGNGCWHGENSAK 97 
                     79*************************999..599***998769****864444212124577***99876...589************988765 PP

             NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  k ++++ g  + + +   + ++ ++  W+mhey+l
  XP_008227085.1  98 VLDPKnEQRVLGFSRRFHYK--NPKSDQNGCWIMHEYSL 134
                     55443344556777776665..66666799*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-236163IPR003441NAC domain
PROSITE profilePS5100527.3748164IPR003441NAC domain
PfamPF023653.8E-189134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGPCAVDLPV GFYFHPKDSD LLGYYLHNKV SGKPMKYEVP KINLYGTSEP WKIWKDFGGD  60
GLEIGEDLYF FTTLKTKGTR VSRKAGNGCW HGENSAKVLD PKNEQRVLGF SRRFHYKNPK  120
SDQNGCWIMH EYSLKDYPSM PKSKSSSVSN DDGDQLVLCR IRKNDSKLHK NERKRKFKSA  180
AEDHGIDDAP VQSKSKIQKI NIDDHDPIGL TSYEPEFVTN PIGLTQSNHQ PEMIDDNQLL  240
GDDFDEALNI AFSYLDGPTI IENNTTPQMQ SYSSMLLCAE REEMGNTPCT DHETERHTSQ  300
SFATGSEFIE VTDDIGFGTS KETSHEYLDI DDQIAQINMS EPDYLQLDDH VFEMRLFDDD  360
DPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-12617018174NAC domain-containing protein 19
3swm_B5e-12617018174NAC domain-containing protein 19
3swm_C5e-12617018174NAC domain-containing protein 19
3swm_D5e-12617018174NAC domain-containing protein 19
3swp_A5e-12617018174NAC domain-containing protein 19
3swp_B5e-12617018174NAC domain-containing protein 19
3swp_C5e-12617018174NAC domain-containing protein 19
3swp_D5e-12617018174NAC domain-containing protein 19
3ulx_A5e-12616113165Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227085.10.0PREDICTED: NAC domain-containing protein 101-like
TrEMBLM5WX440.0M5WX44_PRUPE; Uncharacterized protein
STRINGXP_008227085.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.15e-16NAC-domain protein 101