PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226603.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 296aa    MW: 33648.5 Da    PI: 9.2584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226603.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-171099199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ffk+l     ++++ l++p  f+++++g   + ++ +l+ +sg++  v+l  + + ++ +++kGW++Fvk ++L++g f+vF++dg+s+f  +v+++
  XP_008226603.2 10 FFKIL--LGDFSKH-LRIPPAFIKNFSGG--SLRKCSLRGPSGKVRAVEL--EERENGLFFSKGWQGFVKGHHLEVGNFLVFRYDGESKF--KVTIY 97
                    67777..7778888.********888555..34589**************..**********************************9999..89888 PP

                    -S CS
              B3 98 rk 99
                    ++
  XP_008226603.2 98 DR 99
                    87 PP
2B350.73.1e-161962721490
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      +l +pkk a + g+++++   +tl+d++gr W vkl +  + + +r+ +t+GW e ++an++ +gD++vF+++++s  
  XP_008226603.2 196 YCLLIPKKLAIAEGLNSAR--NVTLRDPNGRLWFVKLVIrpKTSCKRVEFTTGWGECCQANQISVGDTMVFEFVKQSAI 272
                     3499******999*99766..6***************8777777788*************************9876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-226102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-216102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.9567100IPR003340B3 DNA binding domain
CDDcd100178.81E-19998No hitNo description
SMARTSM010192.0E-1610100IPR003340B3 DNA binding domain
PfamPF023621.4E-151099IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-19178278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-19179277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.506183280IPR003340B3 DNA binding domain
CDDcd100171.48E-14184277No hitNo description
SMARTSM010191.5E-11186280IPR003340B3 DNA binding domain
PfamPF023622.9E-14196276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKRSVKKESF FKILLGDFSK HLRIPPAFIK NFSGGSLRKC SLRGPSGKVR AVELEERENG  60
LFFSKGWQGF VKGHHLEVGN FLVFRYDGES KFKVTIYDRS ACEKDVEVAE RGIGSSDSIE  120
SKGNQVRVKE EIIDLETENY NEDYENKTSI ANRRNCNAMS GKKPTTDYVE ETSSECISFK  180
SDHRCFMETM KRHYRYCLLI PKKLAIAEGL NSARNVTLRD PNGRLWFVKL VIRPKTSCKR  240
VEFTTGWGEC CQANQISVGD TMVFEFVKQS AIQLHIFAAV KGKRCPVVLD APNGEN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226603.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226603.20.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A251PM710.0A0A251PM71_PRUPE; Uncharacterized protein
STRINGXP_008226603.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-21B3 family protein