PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008226305.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27511.7 Da PI: 6.5836 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.1 | 1.9e-24 | 7 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk....kvka..eekewyfFskrdkkyatgkrknratk...sgyWka 85 +p+G++F+P++eel +yL ++++g++ ++ v++++d+y + ePw++ + + + +++++y F++ +kk+++g+r r++ +g+Wk XP_008226305.2 7 VPVGYKFRPSEEELFLHYLLPRLNGEDYPE-GVVPDCDLYGTkEPWEIWRdfhhS--SpdDQEDIYVFTTLKKKTPNGSRFCRTVGaagTGVWKG 98 599************************999.99*******9879****7423322..24355688******************643344999*** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k++ + g+++g++k + + + +p+ +W+mhe++l XP_008226305.2 99 EDSGKKIRA-CGSNIGIRKRFRYMNPGSPH--DDRWIMHEFQL 138 ********9.999***********655555..89*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-30 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.093 | 7 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-16 | 8 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGGYYQVPVG YKFRPSEEEL FLHYLLPRLN GEDYPEGVVP DCDLYGTKEP WEIWRDFHHS 60 SPDDQEDIYV FTTLKKKTPN GSRFCRTVGA AGTGVWKGED SGKKIRACGS NIGIRKRFRY 120 MNPGSPHDDR WIMHEFQLDE SLLRVRNKET IVLCLVRKKE TPGKRKFEEL QNHEDVPPRG 180 EIQAQHVHDD QQHHIGPSTY DELRVLDLMN YVEGEDNMVN PTLXCTVRSA GASWHKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-17 | 7 | 165 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-17 | 7 | 165 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-17 | 7 | 165 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-17 | 7 | 165 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-17 | 7 | 165 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-17 | 7 | 165 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-17 | 7 | 165 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-17 | 7 | 165 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-17 | 7 | 165 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-17 | 7 | 165 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-17 | 7 | 165 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-17 | 7 | 165 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-17 | 7 | 165 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-17 | 7 | 165 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008226305.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT893414 | 1e-173 | KT893414.1 Prunus persica cultivar Xiaobaitao NAC66 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008226305.2 | 1e-178 | PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 66-like | ||||
TrEMBL | A0A251PKX6 | 1e-158 | A0A251PKX6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226305.1 | 1e-167 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61910.1 | 3e-22 | NAC domain protein 66 |