PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226143.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 532aa    MW: 59840.9 Da    PI: 4.5884
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226143.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.82e-1101545251374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilk 92 
                     lv+ Ll+cAeav  +d++la++lL+++   +sp gd++qR+ ++f+ +L++rl+  +  ++  +++  + + +    +e+l a++l+++++P++ 
  XP_008226143.1 154 LVHMLLACAEAVGCRDTKLAESLLSQIWVSVSPWGDSLQRVSSCFAMGLKSRLSLlHNVNINGTFNNDTMDVSLtsREEKLEAFQLLNQTTPYIA 248
                     689**************************************************9956666777776666554446689999************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.r 185
                     f++++aN+aI +a++g+e +HiiD+++++ lQWp+L+++LasRpegpp +lRiTg+++   ++  ele+  + L + A++lg+p efn++ +  +
  XP_008226143.1 249 FGFMVANEAICQAAQGKENLHIIDLGMEHTLQWPSLIRTLASRPEGPPkKLRITGLVE--DHNVFELEAGMKALVEEASSLGIPTEFNMISEPvK 341
                     ********************************************988889********..569**************************744358 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      + l+ e+L++++gEal Vn++++lh+ ++es  + +   ++L+++k+l P+v+++veq+a+hn++ Fl rfle+l++ysa+fdslea+lpr+s 
  XP_008226143.1 342 PSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLK---AILQALKKLGPTVLTLVEQDANHNGPFFLGRFLESLHFYSAIFDSLEASLPRNSP 433
                     999**************************88776666...9****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+k+Er+ +++ei+n+va eg +r+erhe++ +Wr++l++aG++ + l+   ++qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  XP_008226143.1 434 QRMKIERQHFANEIRNIVAFEGLNRIERHERADQWRRQLGRAGYQVMGLK--CTSQARMMLSVYGCDGYTLASEKGCLLLGWKGRPIMLASAWQ 525
                     **********************************************9996..689**************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.901128507IPR005202Transcription factor GRAS
PfamPF035147.0E-108154525IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEDFNGWLSF PFHESLNHDL AIRRFCPARV EQEQEGEWEE ILNEIEFSSP SETTSPPCLP  60
ASEVDDFVDS FINMDHCRDD DIQSLEKPQS FDYYDQDGME TFSMVDDMYG DVLMMMEGDD  120
MEMGGLAEDF GVGETNMVPS VEEVSHGVDQ GLHLVHMLLA CAEAVGCRDT KLAESLLSQI  180
WVSVSPWGDS LQRVSSCFAM GLKSRLSLLH NVNINGTFNN DTMDVSLTSR EEKLEAFQLL  240
NQTTPYIAFG FMVANEAICQ AAQGKENLHI IDLGMEHTLQ WPSLIRTLAS RPEGPPKKLR  300
ITGLVEDHNV FELEAGMKAL VEEASSLGIP TEFNMISEPV KPSLLTRENL DLREGEALFV  360
NSIMHLHKYV KESRGSLKAI LQALKKLGPT VLTLVEQDAN HNGPFFLGRF LESLHFYSAI  420
FDSLEASLPR NSPQRMKIER QHFANEIRNI VAFEGLNRIE RHERADQWRR QLGRAGYQVM  480
GLKCTSQARM MLSVYGCDGY TLASEKGCLL LGWKGRPIML ASAWQVHNAS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6416152425377Protein SCARECROW
5b3h_D1e-6416152425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226143.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A314Z4Z10.0A0A314Z4Z1_PRUYE; DELLA protein RGL1-like
STRINGXP_008226143.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-80RGA-like 1