PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 302aa MW: 34771.4 Da PI: 8.9099 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.8 | 4.6e-49 | 19 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l pG+rFhPtdeelv +yL++kve+k+++l e ik +diyk++PwdLpk + + kewyfF++r kky+++ r+nr+tksg+Wkatg dk+v+s XP_008225724.1 19 LLPGYRFHPTDEELVRFYLRRKVENKPIRL-ELIKLIDIYKYDPWDLPKaSGIVGGKEWYFFCRRGKKYRNSVRPNRVTKSGFWKATGIDKPVYS 112 579***************************.89***************523334889************************************** PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl XP_008225724.1 113 VgdFHSCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 148 8554556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-55 | 5 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.571 | 19 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-26 | 21 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEVQNMMSDS NNIKEDANLL PGYRFHPTDE ELVRFYLRRK VENKPIRLEL IKLIDIYKYD 60 PWDLPKASGI VGGKEWYFFC RRGKKYRNSV RPNRVTKSGF WKATGIDKPV YSVGDFHSCI 120 GLKKSLVYYR GSAGKGTKTD WMMHEFRLPA SSSKDDTSNI KNYTQEAEVW TLCRILKRDN 180 NYSCRKYASN WQKTTSNPKQ IVADSSSKPC SPESDISFGA LAANKDQFER SPILYNGHMY 240 EGNRFSAGDQ LSLKGEVDPM VNSYISFSNP KEDEMLTSDG NWDELRPMVD CVLNPSLLYS 300 CR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-46 | 7 | 183 | 3 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225724.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225724.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-83 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A251PIM9 | 0.0 | A0A251PIM9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225724.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 7e-86 | NAC domain containing protein 42 |