PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225685.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 525aa    MW: 56880.5 Da    PI: 6.5991
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225685.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30287345259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh 
  XP_008225685.1 287 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHA 345
                     699************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.397281347IPR003657WRKY domain
SuperFamilySSF1182909.55E-26284347IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-30284347IPR003657WRKY domain
SMARTSM007744.6E-37286346IPR003657WRKY domain
PfamPF031062.1E-25288344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MCSLFMPITR MENYQGDLTD ILRASSAATS AAGAYHSDHL LHHHHQEPEA AADSWHFPSD  60
HPPPMKFSSA SSVMEEEEEE DSKDNFGDPF SSYMRDPLLH ELDISSSSSF FSSPNSSSDM  120
NINITSVDEA GGTSSTFGGA HIVLAPPPPP PHHHHLHHHQ QGGVVDGDPI KRPCNIFSRM  180
LQISPSAKVP VTACDSPLLG AATAVSSPRG ISKAVSGSIS GAMVGSDMII NGNSSSGKGC  240
LLENAGVQIS SPRNPGIKRR KSQAKKVVCI PAPAAANSRP TGEVVPSDLW AWRKYGQKPI  300
KGSPYPRGYY RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHAWPTQR NALAGSTRSQ  360
PSKNGAGSKT SSNSSHQPHQ KPASPTKEEQ NETMNDNNHV SPVITAGSAS TVKEEFEDIE  420
KQLKLDHHQF NGDHQAGFPY RPSMPDDQSN QSHHNEDFFA DLGEIEADPL NLLFSQCFTA  480
DEQQKGSKAA ALDPFNLFDW SGDQNTNNNN NNNATSFGEA AKRRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-23261348280Disease resistance protein RRS1
5w3x_D1e-23261348280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225685.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A251PIB60.0A0A251PIB6_PRUPE; Uncharacterized protein
STRINGXP_008225685.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-87WRKY DNA-binding protein 14