PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225356.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 340aa    MW: 37574.3 Da    PI: 7.0586
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225356.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33182239259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers edp++v++tYeg+Hnh+
  XP_008225356.1 182 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERSFEDPSTVITTYEGQHNHP 239
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-35166241IPR003657WRKY domain
SuperFamilySSF1182905.62E-30173241IPR003657WRKY domain
PROSITE profilePS5081132.501176241IPR003657WRKY domain
SMARTSM007745.4E-40181240IPR003657WRKY domain
PfamPF031061.5E-26182239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSDHEHKDLY YHDLFQYEDH EHLNGGMISI NHNQNLQGIE VPSYMNNTSF AECLKGPMDY  60
NTLATAFGLA SSTSDEVIFS SANEGDQKPA EHIRYSGGGG DGDGGGGETP LTPNSSVSSS  120
SAEAGAEEDS GKSKKDRQPK GSSEDGGDSS KKVMSKAKKK GEKKQREPRF AFMTKSEVDH  180
LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCGVKKRVER SFEDPSTVIT TYEGQHNHPL  240
PATLRGNAAA SSAFFPHAAA AFNYAPITGS AGPSSNFPQE LLFQMPHHYM INNNNQGSSR  300
SVVVNPHHPH HQQQHQLPRA DQHGLLQDLL FPSMFLKQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-31171242778Probable WRKY transcription factor 4
2lex_A6e-31171242778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225356.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLM5X8Q90.0M5X8Q9_PRUPE; Uncharacterized protein
STRINGXP_008225356.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.14e-50WRKY DNA-binding protein 28