PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225134.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 259aa    MW: 27786.8 Da    PI: 10.066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225134.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62.1e-152166250
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae.eAakaaiaar 50
                    +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+tae +A++aa ++r
  XP_008225134.1 21 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEeGARAAAREFR 66
                    69*******.**********8...557**********6637888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.4E-302181IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-162176IPR016177DNA-binding domain
PfamPF008472.7E-92166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-252175IPR001471AP2/ERF domain
PROSITE profilePS5103218.0972175IPR001471AP2/ERF domain
CDDcd000183.65E-172175No hitNo description
PRINTSPR003672.8E-102233IPR001471AP2/ERF domain
PRINTSPR003672.8E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPREKTATA VRASGNVKEV HFRGVRKRPW GRYAAEIRDP GKKSRVWLGT FDTAEEGARA  60
AAREFRGAKA KTNFPLPSEN ISLNMTKNNN ININNNINKN SSGSNNQSPS QSSTVESSSR  120
EPPAVMVDSS PLDLNLSQGV SSGGFGSGPM RFPFQQHQVP SVGAVIGVPA SAAAAANHVL  180
YFDSVFRAGM VKSHQFHQRL RFDHPNLQQH DFHAYGGGGV FACGAQSDSD SSSVVDLNNH  240
DLARGGLLDL NLPPPPELA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-172176261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-171876264ATERF1
3gcc_A6e-171876264ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2230180.0KT223018.1 Prunus persica ethylene responsive factor 9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225134.10.0PREDICTED: ethylene-responsive transcription factor 4
TrEMBLA0A0M4KYD91e-122A0A0M4KYD9_9ROSA; AP2/EREBP family transcription factor-like protein 18
STRINGXP_008225134.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-21erf domain protein 9