PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225130.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 727aa    MW: 81325.8 Da    PI: 4.5889
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225130.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08219238525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+ffa+ G+C +G +CkF H
  XP_008225130.2 219 ICDFFAK-GWCIRGTSCKFVH 238
                     6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.10.103.5E-42178IPR011989Armadillo-like helical
SMARTSM003560.0092214240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-6214238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23214241IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5219238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MPHDDQSPPP GEVSDSADIE EEEEEEEEEE DPEIEEEEDD DDEEEDPEIV EEEEEEEEEE  60
EEEEEEEEEE EVEGEQEEIM EEERIEVDMD ISDSPVQARD HHNDVRQDYK PEGLHGLHSN  120
ESHDDGKAYL RHSEVMDAKA SNSSGVAGEE MANAILMRDH LGKEVKSVMN PEDEMKQGDI  180
HPRNDRKQMD SRSAASEKVT RIMSPVAETS DRNKRPAIIC DFFAKGWCIR GTSCKFVHIK  240
DSPNSTHPQG DVAAANCTRE VQPDEGLRDV TERSRSPGFP DPLASSHLPS EKIRFSEHKG  300
IQRRHQSLEN HKFPAVPGGE SNMGKYSRGN PTSQSSCMEE PAGIWSQRMH SDHNSPLVSL  360
SLNSNSSNLL TNGSFPASRV SSWTGFSLPS SYSCLDASPH GTQKLLDRNR DYRYSTRSSP  420
LLKSSSPFSS SELKKLPSTS VSLRSDKLQT KISSNDWEPS VPFQPSFILP PAFLSSSGSQ  480
YDPLRDSIEL PKLANISFEA SFYSEEAAIG NKLHHQIHGE SVSGTMRPVC DGDTNSMSSH  540
NTCHEKVLDN SCYTREHNSP VTEAETVGAS VVCQNGTMTI EENLSRPSHP KGSTKPHKTS  600
SYGDSRPQSD SSRHKKDITV DRFRENNEVD GEHVTDGDVQ QESKALRHFR AALVELVKEL  660
LKPKWREGCL SKDAHNKIVK KAVEKVLSAF QPQQIPPTVE TVVQYLSSCR PKISKLVEGY  720
VEKYGKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225130.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225130.20.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A251PG180.0A0A251PG18_PRUPE; Uncharacterized protein
STRINGXP_009352887.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-36C3H family protein