PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225096.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 820aa    MW: 92507.9 Da    PI: 8.2215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225096.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05124146123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F+++ +L  H+ +H
  XP_008225096.2 124 FSCHICKKIFPSRKSLYGHMGSH 146
                     89******************887 PP
2zf-C2H213.50.00022418439223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  C+k F++  +L+ H+r+H
  XP_008225096.2 418 SCYVCNKNFPSIKSLHGHMRLH 439
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.87092IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4327097IPR007087Zinc finger, C2H2
PfamPF139122.9E-77088IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-67192No hitNo description
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-6119146No hitNo description
SMARTSM003550.0037124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827124151IPR007087Zinc finger, C2H2
PfamPF139120.0037124148IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SMARTSM003550.84226248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432226253IPR007087Zinc finger, C2H2
PfamPF139121.2E-9226249IPR007087Zinc finger, C2H2
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
SMARTSM003550.29357379IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408357384IPR007087Zinc finger, C2H2
PfamPF139122.3E-4358375IPR007087Zinc finger, C2H2
PROSITE patternPS000280359379IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515417444IPR007087Zinc finger, C2H2
SMARTSM003550.25417439IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.72E-8418439No hitNo description
PfamPF139128.6E-6419441IPR007087Zinc finger, C2H2
PROSITE patternPS000280419439IPR007087Zinc finger, C2H2
SuperFamilySSF576677.72E-8742769No hitNo description
SMARTSM003552.5747769IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-5747769IPR007087Zinc finger, C2H2
PROSITE profilePS501578.538747769IPR007087Zinc finger, C2H2
PROSITE patternPS000280749769IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MKNFHEEDRE YDEVRDDHHR IVSQEVRDYH HMPSEDTKQG VVHGFDDSKG KEIVLRSLNC  60
ENNQDPDRSR ICNVCGKRFG SGQALGGHIS VHFEPRLGPK KMNNKFKVTK QQQLQYYPSL  120
DNKFSCHICK KIFPSRKSLY GHMGSHSRRV KSPSFSSSSS STSSSAECND RDLKEQDYDR  180
VKFLPGWAKK DRGDKKIANQ TPNYNNAFAR KYKFPSSKRL KFLDGHTCNI CYKKFPTGQA  240
LGGHKRAHYF DEAQPVLEAP PAATVKVAST KDHDDGETID PVDSSPLMQL AEQALHLLQA  300
KNKHLQEDDE DQEDQESMDR DDEDIHSQES EQEVELYDDQ KGKQVVQSDV HNQNGDRVCE  360
QCGKRFQNGK ALGGHIKVHF NQSLLPKKNK NLFKPKNKHL SLKEAHSPVG DDHSNKISCY  420
VCNKNFPSIK SLHGHMRLHR ERDWKGVRPP GPSLSPCDES NSSSSYENVS EDEDDGDGSL  480
SDRTIETDND VANFLVNWTK IELRRRSLIA NQTEPNHAEN SGLSNQRQRV PHYAEDQVGE  540
FAGKKPIEES PVGYKGSPSS KKIKCDGRSN KKSTMEASKS TGGTKPMKDI GLLDQTHKQI  600
PTKRQEFGSR RSDTISDVNM DEDSGFSSKY VENQVGELSV KKPIQKSPVG YKGKSSLKIK  660
LKLDGKGKAS MQDVDENDDQ TSWKTKPKKM TMKSTSKTGT RPIKDTALLY QTRKQMARKT  720
QEFGTKFAEK GKYHEEAEAV EHGIKQFECN ICPCKFSTGQ ALGGHKRGHN YKGVPVEEAR  780
GTAQVAPMDL EDGEIRTDPT KFNLDLNQLP HQTDDEDIGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225096.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225096.20.0PREDICTED: uncharacterized protein LOC103324763
TrEMBLA0A251NMM50.0A0A251NMM5_PRUPE; Uncharacterized protein
STRINGXP_008225096.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16199410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-13C2H2 family protein