PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224836.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 319aa    MW: 35330.9 Da    PI: 7.2232
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224836.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof129.41e-4044105263
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     +e+alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rknk+sss
  XP_008224836.1  44 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGTLRNVPVGGGCRKNKRSSS 105
                     7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-274297IPR003851Zinc finger, Dof-type
PfamPF027013.5E-3446102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5948102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNYMDPSSGQ QHQEMSAHSL DMLVCSKTQQ QQQQQQDRKP RPQPEQALKC PRCDSTNTKF  60
CYYNNYSLSQ PRYFCKACRR YWTKGGTLRN VPVGGGCRKN KRSSSSSKRS QDQQPLTPNS  120
NNPLPSLGYD SNDLTLAFAR LQRQSCGQLG FDDQEHLSIL GNPNNTTSHG DHSILGNHGL  180
NMNTTSAAAA PGFLDALRTG FLETHNGNFQ NMYYGFGNGS NSSSLGEVEN GVCGEMGLHT  240
FEEMTNSTTT AVTVTTMKQE LCNARDPQSE SNRVLWGFPW QLNGDANNNM VSNECDSGRV  300
ESWNGLAPSW HGLLHSPLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3665460.0HM366546.1 Prunus persica clone PpDOF1 Dof-type zinc finger domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224836.10.0PREDICTED: dof zinc finger protein DOF2.1
TrEMBLA0A251NMG10.0A0A251NMG1_PRUPE; Uncharacterized protein
STRINGXP_008224836.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.13e-41Dof family protein