PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224508.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 426aa    MW: 47200 Da    PI: 9.2592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224508.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.45e-20247296356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  XP_008224508.1 247 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYMLRGE 296
                     8******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.80E-32245305No hitNo description
PROSITE profilePS5103222.642246303IPR001471AP2/ERF domain
SMARTSM003802.1E-36246309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-32246304IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22246304IPR016177DNA-binding domain
PRINTSPR003671.1E-10247258IPR001471AP2/ERF domain
PfamPF008472.2E-13247296IPR001471AP2/ERF domain
PRINTSPR003671.1E-10269285IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDGKFPKLET FIAKQLPSYF PRMASDIGSN LFGDPAIWCG SGSKSSLSPE SSSSSTEEFS  60
SSGSNLIDNM PGLTKSPFVP VNFLETFPQL SRVQVSDQPP TSPTSLSSNR SKFPNLNLFL  120
QEPNMLDPSS SSSSSSSTQV EVVDSLGKTK GCDEPSMFPY LSIPSFPTPQ VIDQIQRQPG  180
MIEWLKLNQN LASHSSKGFN DYWLSTTKTQ PMKRTGRSSR LQQQINQHHK QPHNNLSSAS  240
SSPGKLFRGV RQRHWGKWVA EIRLPRNRTR VWLGTFDTAE EAAIAYDTAA YMLRGEHAHL  300
NFPDLKHQLK ANALKGNTAA LLEAKLQAIS SSQAHQKAIM ESKSSQLASP NKYSNLMINS  360
NFSQNPTRKE WQFGLESKVG SDHQVVIESK KSQQELVSAD VDAVQLSRMP SLDMDMIWDA  420
LLVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20242303163ATERF1
3gcc_A1e-20242303163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224508.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A314UPH40.0A0A314UPH4_PRUYE; Ethylene-responsive transcription factor ERF062
STRINGXP_008224508.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-63ERF family protein