PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224394.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 179aa    MW: 20231.7 Da    PI: 6.2264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224394.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143658123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  XP_008224394.1 36 YECTFCKRGFTNAQALGGHMNIH 58
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-53162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.11E-73262No hitNo description
PROSITE profilePS5015711.4683663IPR007087Zinc finger, C2H2
SMARTSM003550.00973658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MESWRPRSPE TSLSSDEDQV KDHDQDSGST TAKRSYECTF CKRGFTNAQA LGGHMNIHRK  60
DRAKAKQLVS GTSSLNSNHY SNEDQYSSLS TYHHQQFSTA PISSQAGSGY YPVVDQRNYQ  120
MYFQPSGSSP RIPYGYDHDD SIGSRHQSLG VNQDLEDDEY RRGLRSNDEV DLELRLGHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224394.11e-132PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM5Y9161e-123M5Y916_PRUPE; Uncharacterized protein
STRINGXP_008224394.11e-131(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-19C2H2 family protein