PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223345.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 596aa    MW: 67023.2 Da    PI: 4.894
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223345.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.16.5e-862235941374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl.fsevsPilk 92 
                     lve Ll+ Ae v  ++ e+a +lL+r   l+s++g++++R++ yf eAL++++ r ++  + k l  +++ + n   ++ + ++l  +   P+ +
  XP_008223345.1 223 LVEFLLASAEKVGYQQYERAGKLLNRCDLLSSSTGNSVERVVYYFSEALREKIDReTGRVTPKGLGNRPSFDVNkAMKRPNETSLaCQIKIPFGQ 317
                     57889**************************************************444445566644444433335555555555356668**** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +++++  qaI+e v+++++vH+iD++i +G+QW  L+qaL sR++ p   l+i ++g    +s++ +eetg+rL++fAe++++pf+f+++++ ++
  XP_008223345.1 318 VAQFAGIQAIVENVAEAKKVHVIDLEIRNGVQWTGLMQALVSRSDCPVeLLKISAIGT---SSRKLIEETGKRLESFAESMNLPFSFKLVMVPDM 409
                     ********************************************6655499*******...579999**********************9999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      dl+ ++++++++E++aV + +++ ++++++  les     ++++k+++P v vv+e e +hns+ F++rf+eal ++ a fd++e+ + r++ +
  XP_008223345.1 410 LDLKEDMFELDSEETVAVYSEFAMRTMVAQPDRLES----AMRVIKKIRPCVTVVTEVEGNHNSPVFVTRFIEALFFFGAYFDCVETCMERNDPN 500
                     ****************************99999999....******************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r+ +E +++g+ ++n+va+eg+er+ r+ +   Wr+ + + G++++ ls +   q++l+l++++ +   +v+ + ++l+ gWk+ pL s+S W+
  XP_008223345.1 501 RMILESQYFGNGLRNIVAAEGEERKIRNVKIDVWRAFFARYGMEEIDLSPSSLYQVDLVLKNFScGSSCTVNMDGKCLLVGWKGTPLQSLSLWK 594
                     ****************************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.156197573IPR005202Transcription factor GRAS
PfamPF035142.2E-83223594IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MTNAMFSFGE FNFGGVQDKL SSTDKGSDTI MEEVKKIRKQ VHSYEADNWG DSGGFGSLGS  60
DYGFYGNNHY SSELLFPKFQ QQEEQQPLVS DYGLFDAMQF DALSPPFQAC LEEIAKLEDI  120
PTLVPHVEPK KEKRDFSSLA GLDLLNNYGS GFKRLNGERI FESSNYTDQV TGRKLSTEEI  180
MRVAGARFIR TSSQASGVAS MLSHPYEFSF SGLSVEETRD VELVEFLLAS AEKVGYQQYE  240
RAGKLLNRCD LLSSSTGNSV ERVVYYFSEA LREKIDRETG RVTPKGLGNR PSFDVNKAMK  300
RPNETSLACQ IKIPFGQVAQ FAGIQAIVEN VAEAKKVHVI DLEIRNGVQW TGLMQALVSR  360
SDCPVELLKI SAIGTSSRKL IEETGKRLES FAESMNLPFS FKLVMVPDML DLKEDMFELD  420
SEETVAVYSE FAMRTMVAQP DRLESAMRVI KKIRPCVTVV TEVEGNHNSP VFVTRFIEAL  480
FFFGAYFDCV ETCMERNDPN RMILESQYFG NGLRNIVAAE GEERKIRNVK IDVWRAFFAR  540
YGMEEIDLSP SSLYQVDLVL KNFSCGSSCT VNMDGKCLLV GWKGTPLQSL SLWKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3723159327378Protein SCARECROW
5b3h_A8e-3723159326377Protein SCARECROW
5b3h_D8e-3723159326377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223345.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A314V0M20.0A0A314V0M2_PRUYE; DELLA protein RGL1-like
STRINGXP_008223345.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-58RGA-like 2