PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008223296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 151aa MW: 16960.1 Da PI: 7.1165 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.7e-06 | 20 | 42 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F ++ L H++ H XP_008223296.1 20 FECHYCGRKFENSQALGGHQNAH 42 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.0E-4 | 19 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.51E-6 | 19 | 48 | No hit | No description |
PROSITE profile | PS50157 | 12.466 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 22 | 42 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MKLFGFSVTD HRDIVPMVKF ECHYCGRKFE NSQALGGHQN AHKRERQLER MAILEHVQQH 60 HQPPPPPPPP HDHDHDQYQR SATGVPIIND PMFVSSSRST TVDGCAGYNT AGGAVVAPKD 120 PHGLYLKQIA KQEAVPKVDE ENDVVDLRLR L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008223296.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008223296.1 | 1e-110 | PREDICTED: zinc finger protein JAGGED-like | ||||
TrEMBL | A0A498HLW8 | 1e-50 | A0A498HLW8_MALDO; Uncharacterized protein | ||||
STRING | XP_008223296.1 | 1e-110 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3903 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58070.1 | 1e-14 | C2H2 family protein |