PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222420.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 686aa    MW: 75552.5 Da    PI: 9.5668
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222420.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07588637147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_008222420.1 588 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 637
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.32E-8397488IPR029071Ubiquitin-related domain
PROSITE profilePS500538.59403473IPR000626Ubiquitin domain
PROSITE profilePS5129415.641583642IPR017930Myb domain
SMARTSM007172.0E-7587640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10588638IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15589670IPR009057Homeodomain-like
CDDcd116603.86E-17589639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPATP RATRSARRRG AIRKRVDDNS MGAFDLLATI AGKLLLEGES  60
SPASSHTSKD QCAGTKENCL DGDKPLKVEP CDQGSCDRRI PVSDHISQGP NQSSCSKESP  120
VHQNESSVMT TSNCSERFAS DILVSGKCKN ETGSFTSKIE AGSSGCREAG EFKLDGEVKT  180
LIKDETNKSA KVLIGTGPGM CGLEDPVVWE GEPPALVSSD SSTKVPMYVD HIPQRSFPTS  240
RDDVKVVSRD DDENSSGCTH PVTSIKYSRP APSRIGDRRI RKILASKYWK VAPKLKDDIH  300
SNSCKWLPCT KRMYRDQKPN YHNRKNCYKR QRSQMNIPFK KRKLFDRNAV LNIDEGISRE  360
GFFDSRGKGI TGDASCSKMQ GAAMKSSSLA GQHSSFQSRS SHVKLRIKSF RVPELFIEIP  420
DTATVGSLKK TVMDAVTAVL GGGVCVGVLL QGKKVRDDNK TLQQTGISQD NQLDSLGFTL  480
EPNPSQTPPP LCSGDSPRML PCNVLQPLTR YPSGPTSEAS PEPHTASLGN FIESDHDSAP  540
SPTDMSAEKS TTDSKALVAV PDMSVEALAV VPGHRKSKRF DIGQRRIRRP FSVAEVEALV  600
QAVEKLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR  660
VLTAHAYWSQ QQAKQQLKQP ETCLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-565726781107Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222420.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
TrEMBLA0A251NLL40.0A0A251NLL4_PRUPE; Uncharacterized protein
STRINGXP_008222420.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-112TRF-like 2