PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222411.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 691aa    MW: 78368.5 Da    PI: 4.9994
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222411.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.72.1e-1103276893374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+av+s d + a++ L ++++++sp+gd +qRla+y++++L+ rla         l+p    e++ ++ l a++++  ++P+ k+s++ 
  XP_008222411.1 327 TLLTQCAQAVASYDIRTANEQLRQIRQHSSPYGDGTQRLAHYLANGLELRLAA-----GVPLNP----EMSAADLLRAYQTYITACPFQKMSNFY 412
                     69**************************************************9.....222333....34579********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++I + +e+++r+HiiDf++ +G QWp+L+q L++R +gpp+lRiTgv+ p++g   +e++e+tg+rLa+++++++vpfe+nv +ak++e+++
  XP_008222411.1 413 ANRTIAKLAEKATRLHIIDFGVLYGYQWPCLIQGLSNRHGGPPTLRITGVEFPQPGfrPSERVEATGRRLANYCKRFNVPFEYNV-IAKNWETIQ 506
                     *******************************************************9****************************9.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+++++++E ++Vn+ ++l++l+de+v+ +  rd+vLkl+++++P+++++   + ++n++ F +rf eal ++s+lfd++e++lpre+++r   
  XP_008222411.1 507 YEDIKIDRDELIVVNCLYRLKNLPDETVTESP-RDTVLKLIRRINPDIFIHGVVNGSYNAPFFDTRFREALFHFSSLFDMFEETLPREDQQRLLF 600
                     ************************88887666.************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+e+ gr++ nv+aceg++r+er et+++W+ r ++aGF+++pl++++ k++++++   + + + v+e+  ++++gWk+r + ++S W+
  XP_008222411.1 601 EKEVYGRDVINVIACEGSRRFERPETYKQWQFRNKRAGFRQLPLDQEILKKVRSMVTSEYHKDFVVDEDGMWVLQGWKGRIIHAISYWK 689
                     ********************************************************9999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.066299669IPR005202Transcription factor GRAS
PfamPF035147.4E-108327689IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDTFLDEIPG SMNKFIFDQG SVPPYSNQNI VTEFEADHDF TDPSFFLVNP DPSSDFSSLS  60
GFSSEVDSPD SQSSNAILKY ISEMLMEEEL ENKPCMLQDC LALQAAEKSL HDVLVQEHPS  120
SANSLLTSVY QNVENPDEGS NHSSNGSVAA SNWVGSDWDC VQDVFQSSHI QISATESPAY  180
TLLVPNPLLS NGKGEIIDVE SSSSFPIEPR ELAKDVSFNS VQDGSRSPSG SRSKKNRQRE  240
DGDDLDEGRS NKQSAVYDDE SELPELFDKV LLCQGEKQES QSCSPQESEH KEGSGKLQLN  300
RKSRGSKGKK TRNKKPDDNT GGVDLWTLLT QCAQAVASYD IRTANEQLRQ IRQHSSPYGD  360
GTQRLAHYLA NGLELRLAAG VPLNPEMSAA DLLRAYQTYI TACPFQKMSN FYANRTIAKL  420
AEKATRLHII DFGVLYGYQW PCLIQGLSNR HGGPPTLRIT GVEFPQPGFR PSERVEATGR  480
RLANYCKRFN VPFEYNVIAK NWETIQYEDI KIDRDELIVV NCLYRLKNLP DETVTESPRD  540
TVLKLIRRIN PDIFIHGVVN GSYNAPFFDT RFREALFHFS SLFDMFEETL PREDQQRLLF  600
EKEVYGRDVI NVIACEGSRR FERPETYKQW QFRNKRAGFR QLPLDQEILK KVRSMVTSEY  660
HKDFVVDEDG MWVLQGWKGR IIHAISYWKP V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-453296898375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300315RKSRGSKGKKTRNKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222411.10.0PREDICTED: scarecrow-like protein 30
TrEMBLM5W3910.0M5W391_PRUPE; Uncharacterized protein
STRINGXP_008222411.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-177GRAS family protein