PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222397.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 684aa MW: 77078.8 Da PI: 5.8548

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222397.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.4	3.5e-115	311	680	2	372
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lL+ecA+av s d++ a++lL+++++++sp+g ++qRla+yf+e+L+arla+ s y l +t +++e l+a+++++ ++P+ k+ h+ XP_008222397.1 311 CKLLTECAQAVGSYDQQSASELLKQIRQHSSPYGYATQRLAHYFAEGLEARLAGARSLSYPPLLFMHT---STTEILKAYQVYVSACPFKKMLHF 402 589*************************************************66555655555555...59****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN++I++ +e+++r+HiiDf+is+GlQWp+L+q+L+++++gpp+lRiT+++ p++g +e++eetg+rLak+ e+ gvpfe+nv +ak++e++ XP_008222397.1 403 FANRTIMKQTEKATRLHIIDFGISYGLQWPCLIQSLSEKTGGPPNLRITAIELPQPGfrPAERIEETGRRLAKYSERYGVPFEYNV-IAKKWETI 496 ****************************************************9************************9.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 leeL+++++E+++Vn++++l++++de+v ++++rd+vL+l+k+++P+++ + + +n++ F++rf + l ++ alfd++ea++pr++e+r XP_008222397.1 497 GLEELQIDRNEVIVVNCMHRLKQIPDETVMMNNPRDAVLNLIKRINPDLFMHGVVNGTYNAPAFVTRFKQLLFHFHALFDMYEATVPRDDEHRLL 591 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 Er+++gr+i+nv+aceg er+er et+++W++r +aGF+++pl+ + k++k++ ++++ + + +e++ +++++gWk+r ++++Sa XP_008222397.1 592 FERAIFGRDIKNVIACEGLERVERPETYKQWQARYVRAGFEQLPLDRELFKKVKTMSKMMGyHKDFGIEDDGEWMLQGWKGRIILALSA 680 ********************************************************99999********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65	284	661	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-112	311	680	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MEELNFVHGS NSVASDQNLV NGLQVNHEPT NKLLLPANLD RPSDSGTSSE GDTVESSDCN 60 LPVLKYISDI LLEEDLEGKP CMLEDILGLQ AAEKSFYDAL NQKDPPLPNQ PSFSVYQSFE 120 NSDGGFQSSN GSIAAKTGSV WDFSETSHVQ TSPVESLSDT TLVSDSFSDT QSLGNFRGVG 180 EGNEIIDLEG YQCTPPGPNT LYRNLASVPE NYAYNSTNGS KGKKNHQREE GHYTEEGRSN 240 KQSAAFADDS DLQEMFDKVL QGVNPESESC FHDESLNAEG TRKLQHNKQS KGSKTKCLKK 300 PNSNRQVVDL CKLLTECAQA VGSYDQQSAS ELLKQIRQHS SPYGYATQRL AHYFAEGLEA 360 RLAGARSLSY PPLLFMHTST TEILKAYQVY VSACPFKKML HFFANRTIMK QTEKATRLHI 420 IDFGISYGLQ WPCLIQSLSE KTGGPPNLRI TAIELPQPGF RPAERIEETG RRLAKYSERY 480 GVPFEYNVIA KKWETIGLEE LQIDRNEVIV VNCMHRLKQI PDETVMMNNP RDAVLNLIKR 540 INPDLFMHGV VNGTYNAPAF VTRFKQLLFH FHALFDMYEA TVPRDDEHRL LFERAIFGRD 600 IKNVIACEGL ERVERPETYK QWQARYVRAG FEQLPLDREL FKKVKTMSKM MGYHKDFGIE 660 DDGEWMLQGW KGRIILALSA LKPA

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MEELNFVHGS NSVASDQNLV NGLQVNHEPT NKLLLPANLD RPSDSGTSSE GDTVESSDCN  60
LPVLKYISDI LLEEDLEGKP CMLEDILGLQ AAEKSFYDAL NQKDPPLPNQ PSFSVYQSFE  120
NSDGGFQSSN GSIAAKTGSV WDFSETSHVQ TSPVESLSDT TLVSDSFSDT QSLGNFRGVG  180
EGNEIIDLEG YQCTPPGPNT LYRNLASVPE NYAYNSTNGS KGKKNHQREE GHYTEEGRSN  240
KQSAAFADDS DLQEMFDKVL QGVNPESESC FHDESLNAEG TRKLQHNKQS KGSKTKCLKK  300
PNSNRQVVDL CKLLTECAQA VGSYDQQSAS ELLKQIRQHS SPYGYATQRL AHYFAEGLEA  360
RLAGARSLSY PPLLFMHTST TEILKAYQVY VSACPFKKML HFFANRTIMK QTEKATRLHI  420
IDFGISYGLQ WPCLIQSLSE KTGGPPNLRI TAIELPQPGF RPAERIEETG RRLAKYSERY  480
GVPFEYNVIA KKWETIGLEE LQIDRNEVIV VNCMHRLKQI PDETVMMNNP RDAVLNLIKR  540
INPDLFMHGV VNGTYNAPAF VTRFKQLLFH FHALFDMYEA TVPRDDEHRL LFERAIFGRD  600
IKNVIACEGL ERVERPETYK QWQARYVRAG FEQLPLDREL FKKVKTMSKM MGYHKDFGIE  660
DDGEWMLQGW KGRIILALSA LKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-47	316	683	24	379	Protein SCARECROW
5b3h_D	2e-47	316	683	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222397.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222397.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A251NNC5	0.0	A0A251NNC5_PRUPE; Uncharacterized protein
STRING	XP_008222397.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein