PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222025.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 385aa    MW: 44307.6 Da    PI: 6.2517
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222025.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix881.1e-2772153286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li++rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y++++e
  XP_008222025.1  72 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 153
                     ********************************************************************84...556899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.57164128IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-465130IPR009057Homeodomain-like
SMARTSM007175.2E-568130IPR001005SANT/Myb domain
CDDcd122033.46E-2970135No hitNo description
PfamPF138371.5E-2171155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MYLSEKPRAI DFYKEEGSRD MMIEVVSNDD LSQSQTHHPN HQPQQQQQQM LLGDSSGEDH  60
EVKAPKKRAE TWVQDETRSL IALRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC  120
TDKWRNLLKE FKKAKHHDRG SGSAKMSYYK EIEEILKERN KNAQYKSPTP PKVDSFMQFS  180
DKGIEDASIS FAPVEVPWCT ASGRPTLNLE RRLDHDGHPL AITAADAVTA SGVPPWNWRE  240
TPGNGGEGQS CGRVILVTWG DYTRRIGIDG TADAIKEAIK SAFRLRTKRA FWLEDEDQIV  300
RSLDRDMPLG NYTLHLDEGV AIKVCLYDES DHIPVHTEEK IFYTEDDYRD FLTRRGWSCL  360
REFDGYRNIE NMDDLRPGAI YRGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-5266151186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222025.10.0PREDICTED: trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A251R2910.0A0A251R291_PRUPE; Uncharacterized protein
STRINGXP_008222025.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]