PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221690.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31913.2 Da    PI: 4.4499
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221690.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-194498357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k+
  XP_008221690.1 44 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKN 98
                    56689***********************************************995 PP
2HD-ZIP_I/II127.55.5e-4144135293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk+++d+lk+++++L ke+ +L++e+++
  XP_008221690.1  44 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKNKQLEKEYDSLKASFDKLKADHDNLLKENGSLKNEIDS 135
                     9**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.23E-1931101IPR009057Homeodomain-like
PROSITE profilePS5007117.3133999IPR001356Homeobox domain
SMARTSM003896.3E-1841103IPR001356Homeobox domain
CDDcd000865.89E-1842100No hitNo description
PfamPF000461.8E-164497IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-2046107IPR009057Homeodomain-like
PRINTSPR000311.6E-67079IPR000047Helix-turn-helix motif
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PRINTSPR000311.6E-67995IPR000047Helix-turn-helix motif
PfamPF021831.1E-1699140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGSNSVVNFE SASGEDSLDR SFFRPIDKEN GDDDYDASLN QPGKKRRLTV DQVQFLEKNF  60
EVENKLEPER KAQLAKELGL QPRQVAIWFQ NRRARFKNKQ LEKEYDSLKA SFDKLKADHD  120
NLLKENGSLK NEIDSLKDML ILKDKGKPGK RNLELHDANN IILSDVKPQS ATPNAASDNV  180
PMVVCKQEDA SSAKSDVFDS DSPHCTENHS SLLEPADSSH VFEPAEQSDF SQDEDDDLSR  240
TLLPPPYFLK LEDSCYDEPP ASSSNFVFPM EDQQPFCFWP Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221690.10.0PREDICTED: homeobox-leucine zipper protein HAT5 isoform X4
TrEMBLA0A251R3Q50.0A0A251R3Q5_PRUPE; Uncharacterized protein
STRINGXP_008221688.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-40homeobox 1