PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221689.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 321aa    MW: 36244.1 Da    PI: 4.4517
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221689.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-1984138357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k+
  XP_008221689.1  84 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKN 138
                     56689***********************************************995 PP
2HD-ZIP_I/II127.27.2e-4184175293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk+++d+lk+++++L ke+ +L++e+++
  XP_008221689.1  84 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKNKQLEKEYDSLKASFDKLKADHDNLLKENGSLKNEIDS 175
                     9**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-1971141IPR009057Homeodomain-like
PROSITE profilePS5007117.31379139IPR001356Homeobox domain
SMARTSM003896.3E-1881143IPR001356Homeobox domain
CDDcd000865.37E-1882140No hitNo description
PfamPF000462.2E-1684137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1986147IPR009057Homeodomain-like
PRINTSPR000312.0E-6110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000312.0E-6119135IPR000047Helix-turn-helix motif
PfamPF021831.4E-16139180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSGGKLYSAS DMNVIFQNEK LPCSSDVLES IWVPTSSSSF HGSNSVVNFE SASGEDSLDR  60
SFFRPIDKEN GDDDYDASLN QPGKKRRLTV DQVQFLEKNF EVENKLEPER KAQLAKELGL  120
QPRQVAIWFQ NRRARFKNKQ LEKEYDSLKA SFDKLKADHD NLLKENGSLK NEIDSLKDML  180
ILKDKGKPGK RNLELHDANN IILSDVKPQS ATPNAASDNV PMVVCKQEDA SSAKSDVFDS  240
DSPHCTENHS SLLEPADSSH VFEPAEQSDF SQDEDDDLSR TLLPPPYFLK LEDSCYDEPP  300
ASSSNFVFPM EDQQPFCFWP Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221689.10.0PREDICTED: homeobox-leucine zipper protein HAT5 isoform X3
TrEMBLA0A314UJX00.0A0A314UJX0_PRUYE; Homeobox-leucine zipper protein HAT5 isoform X3
STRINGXP_008221688.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-39homeobox 1