PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221525.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 330aa    MW: 36022.5 Da    PI: 6.4363
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221525.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.26.8e-33169226259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  XP_008221525.1 169 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 226
                     8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-34153227IPR003657WRKY domain
SuperFamilySSF1182903.53E-28160226IPR003657WRKY domain
PROSITE profilePS5081129.712163228IPR003657WRKY domain
SMARTSM007743.2E-38168227IPR003657WRKY domain
PfamPF031061.2E-25169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDDDKYNRDP ASTTEFTTQS TWPLDPDSAY FFASHDVRDN TLLTEFGWNF HPDGSRPDGF  60
SELDPIGTRD MSDLAATSSQ LVADCLRPAD SSSSSTAAFR SSDPAPAVGS ASTNPSGSST  120
SSEDPPEKST GSGGKPPPEI PSKVKKKGQK RIRQPRFAFM TKSEVDHLED GYRWRKYGQK  180
AVKNSPFPRS YYRCTNSKCT VKKRVERSSE DPTIVITTYE GQHCHHTVAF PRGGVIAQES  240
GFAGHHLAQL PPVSSHFMYY PAIQPRERVS PVNLTRTTSH QLASPRGDDD DDDDQAAGAG  300
SSHCLNPQTT SVPADEGLLG DIVPPGMRNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25158225774Probable WRKY transcription factor 4
2lex_A2e-25158225774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221525.10.0PREDICTED: probable WRKY transcription factor 57
RefseqXP_016647267.10.0PREDICTED: probable WRKY transcription factor 57
TrEMBLM5XCG60.0M5XCG6_PRUPE; Uncharacterized protein
STRINGXP_008221525.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108143140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-68WRKY DNA-binding protein 57