PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008220979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 628aa MW: 67446.8 Da PI: 8.7095 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_008220979.1 74 FICEVCNKGFQREQNLQLHRRGH 96 89*******************88 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_008220979.1 150 WKCEKCSKRYAVQSDWKAHSKTC 172 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-6 | 73 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.89E-7 | 73 | 96 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.1E-5 | 74 | 96 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 115 | 145 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.7E-5 | 138 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.89E-7 | 145 | 170 | No hit | No description |
SMART | SM00355 | 130 | 150 | 170 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MAASSSSVEP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPNPEAEV 60 IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP KRKVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD 180 CGTLFSRRDS FITHRAFCDA LAQESARHPP SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ 240 ISSLQQDHSQ SSTAADILRL GGAGAAGAAR TGQFDHLLGS SFRPAAQSSA SFFLTAADQS 300 TQQQYHDHDQ DKSFQGLMQF SDNHHHHHHH LHQNNNNSNN PPHHHSAGAN LFSLPFLSNN 360 TTNTTNNNNS ATNNNLLISP DHFNTNVNGT TTAAGGSEGS HNLFSGHIVG GDHISTGIPS 420 LYSTNSNINN NNQQQQQQHA SMAHMSATAL LQKAAQMGST NSSNNTTASL LRSFGSSSSA 480 TAKSDRPGAL VPSSLGGMFG SDQHDQSHLQ DLMNSFANTG GSSIFANASF GGYDAAAANR 540 AINMEETKLQ QQNSLGVSNI GGADRLTRDF LGVGQVVRSM SGGFSHQRSE HHSEQQHGMD 600 MSSLDSESNA AAAAAPSSQS FGGGGNFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 146 | 207 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 146 | 207 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008220979.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM455095 | 1e-122 | AM455095.1 Vitis vinifera contig VV78X055432.12, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220979.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_016648019.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-139 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | M5XVM9 | 0.0 | M5XVM9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220979.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-114 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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