PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220916.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 700aa    MW: 76185.2 Da    PI: 5.8656
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220916.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06277297526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  XP_008220916.1 277 PCPEFRK-GACRQGDACEYAHG 297
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.95E-1230147IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-1431170IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01573103IPR002110Ankyrin repeat
PfamPF127961.1E-773138IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.20473143IPR020683Ankyrin repeat-containing domain
CDDcd002044.59E-775146No hitNo description
SMARTSM002480.78108140IPR002110Ankyrin repeat
PROSITE profilePS500889.912108143IPR002110Ankyrin repeat
SMARTSM003567.1E-5272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455277299IPR000571Zinc finger, CCCH-type
SMARTSM0035628307330IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925307331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MCSGSKRKPS STDLIMEREK QEGMRYSFSI LLELSASDDL DGFKRAVEEE GHDVDEASYW  60
YGRLIGSKKM GFEERTPLMI AAMFGSKNVL NYILQTCLAD VNRACGSDRA TALHCAAAGG  120
SSASAEIVKL LLATSADASS LDANGNQAGD LIAPAYSSTF SSRKKALEVM LKGVPSIDEP  180
FDFSEQMVYE TEGQEQQEIT TPRALKDGTE KKEYPIDLSL PDIKNGIYST DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGACRQGD ACEYAHGIFE  300
CWLHPAQYRT RICKDETGCT RRVCFFAHKP EELRPLYAST GSAVPSPRSF SANASSLDMG  360
SISPLSLNSP SMLIPPASTP PMTPSGASSP RSGNMWQNQP NIAPPTLQLP GSRLKSTLSA  420
RDMDLDIELL SLESHRRRQQ RLIDEMSGSP TSWNTGLSSP SAFAASGNRT GELNRIGGVN  480
PTNLDDIFGS LDPAILPQYN GPASQLHSPT GIQMRQNMNL QPRPSYSASL SSSPVRASPL  540
FGADASSAAA VLSSRSAAFA KRSQSFIERS AGNRNPGFSS PADSGTLMPS NISDWGSPGG  600
KLDWGVQGEE LNKLRKSASF GFRSSGSSFS NAPTMMPGTA DEPDVSWVQS LVKDAPPPSQ  660
LGQFGFEDQQ QPQCHPNNGG PEMLPAWVEQ LYLEQEQMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220916.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220916.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLM5W8850.0M5W885_PRUPE; Uncharacterized protein
STRINGXP_008220916.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein