PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220815.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 350aa    MW: 38261.5 Da    PI: 7.203
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220815.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.6e-33112167460
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     +rY+eClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+ev+ e
  XP_008220815.1 112 IRYRECLKNHAANIGGNVFDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEVDGE 167
                     79*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-30112164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-24112165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-30113164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.979114163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.48E-20252317IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-31253318IPR009057Homeodomain-like
PROSITE profilePS500718.956254318IPR001356Homeobox domain
TIGRFAMsTIGR015654.9E-29256313IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDFRAQPQDN EMRTSGSLSY ASSAHHLSTK ESSPAAAAAA AADHQKRRVG IHNGNNTYAT  60
SPHQTLDHHI QHPHPPLQPL IRDPDPDRAL AGTPVPPTVL ASGGPKSTSK IIRYRECLKN  120
HAANIGGNVF DGCGEFMPSG EEGTLEALKC AACDCHRNFH RKEVDGETTA FSPGSRRSSI  180
MLSPLQLPPP LPSPSSALHH HHHHHQKFSM APIIQPMNVA FGSGGGGTES SSEDLNVFQS  240
NNAEGGLPMP PFAMSKKRFR TKFTQEQKER MTEFAEKVGW RIQKQDEEEV ERFCSEVGVK  300
RQVLRVWMHN NKNSAKKQSD ILTTPATTSL SFENVEAEEE GGGEGGRDNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-252573141875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220815.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220812.10.0PREDICTED: zinc-finger homeodomain protein 5 isoform X1
SwissprotQ9FRL54e-71ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A251R9D70.0A0A251R9D7_PRUPE; Uncharacterized protein
STRINGXP_008220812.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-66homeobox protein 33