PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220683.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 323aa    MW: 36277.8 Da    PI: 7.8528
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220683.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.84.4e-28168227159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +C+vkkkv++sae+p v++ tYegeHnh 
  XP_008220683.1 168 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCQVKKKVQKSAENPCVLVATYEGEHNHM 227
                     58***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-27159229IPR003657WRKY domain
PROSITE profilePS5081125.752163229IPR003657WRKY domain
SuperFamilySSF1182905.49E-24165229IPR003657WRKY domain
SMARTSM007741.4E-30168228IPR003657WRKY domain
PfamPF031069.0E-23169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDSEWVNTSL GLNVIPFHPA SYDQAPVKKQ LELEGDYTKV FEGHASVKQE AAASHVLTEE  60
LNRISLENKK LTEMLASLCE NYTNLQSHVK ELMITKQQSS DQNDLATNFN KKRKPDSEDY  120
SNMIGLTSTE TSSISDEEYG CKRPKENMNL KISRVYVRTE ASDTRLIVKD GYQWRKYGQK  180
VTRDNPSPRA YYKCSFAPSC QVKKKVQKSA ENPCVLVATY EGEHNHMHPE TRAEVTLIGS  240
ISPNQQLSPL SPSMPKRTSP VPTFSCDKNN NLSPREIEGA PPAFQQFLVQ QMASSLTKDP  300
NFASALAAAM SGRFSDHSRM GNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-191672291677Probable WRKY transcription factor 4
2lex_A6e-191672291677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220683.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220683.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A251RCV90.0A0A251RCV9_PRUPE; Uncharacterized protein
STRINGXP_008220683.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.24e-70WRKY DNA-binding protein 18