PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220681.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 285aa    MW: 31617.6 Da    PI: 8.1496
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220681.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY857.2e-2793153159
                     ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ k+++  pr+Y++C+ a +Cpvkkkv+r+  d++v++ tYegeHnh+
  XP_008220681.1  93 VKDGYQWRKYGQKVTKDNPsSPRAYFKCSLApRCPVKKKVQRCMVDKSVLVATYEGEHNHD 153
                     58**************997369*******999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-2784154IPR003657WRKY domain
PROSITE profilePS5081123.07888155IPR003657WRKY domain
SuperFamilySSF1182903.53E-2289153IPR003657WRKY domain
SMARTSM007743.1E-2993154IPR003657WRKY domain
PfamPF031064.5E-2294153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MISYCPVALE ILMNMDAHTP TKRKVDDLQQ DLLRLRKENE ALRFLLQAMT TKCNTLEQLI  60
REKNIERHDQ FPVAQKTTQF LVRTDSKDNT LIVKDGYQWR KYGQKVTKDN PSSPRAYFKC  120
SLAPRCPVKK KVQRCMVDKS VLVATYEGEH NHDAINGSPL GQFCCSSSTA DHNNNIIFNP  180
INFPSHGISA TINNNDVINI ASPSNSSRPV PITLDLTLSG SMSNQENNGS AGSPQNSSSC  240
APNINCESRI EDYVAYLTKD HNFTQALAAA VASSITRPPA GTENQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18921531372WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220681.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220681.10.0PREDICTED: probable WRKY transcription factor 40
RefseqXP_008220682.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A251RAA70.0A0A251RAA7_PRUPE; Uncharacterized protein
STRINGXP_008220681.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-39WRKY DNA-binding protein 40