PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220427.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 368aa    MW: 40335.4 Da    PI: 7.6371
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220427.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07133154426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+ f++ G+C  Gd+C FaHg
  XP_008220427.1 133 AACPEFRK-GHCAKGDSCEFAHG 154
                     78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.63481118IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009130156IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5133154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4134156IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.62164188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MMLGEPTRLH PTLQVPPWDP FDDLTPTSPF SAPNPSVNIN SNAGNGDYSP LSPMFLDSLA  60
ALHRYLPSNE SDSLGDDPDM PMNPISCDQF RMFEFKVRRC ARGRSHDCTE CPYAHPGEKA  120
RRRDPRKYHY SGAACPEFRK GHCAKGDSCE FAHGVFECWL HPARYRTQPC KDGLGCHRRV  180
CFFAHTPEQL RVLPGQSPRT HGSGAFDSYS YGSSPTSILI SPPISPPSDS PPMSPNSPQL  240
GCNSVSELVA SMRNFKLAKM KMSAQPAWGP QMGSGFGSSP RGSALRPAFC SLPSTPTRTS  300
GRVGPGAVDL WDHPCEEEPA MERVESGRDL RARMYARLSK ENSMGRVGRV DSGMSAPDVG  360
WVSELVSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220427.10.0PREDICTED: zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G21e-119C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLM5XSK70.0M5XSK7_PRUPE; Uncharacterized protein
STRINGXP_008220427.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-119C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]