PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220408.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 435aa    MW: 46883.9 Da    PI: 5.6151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220408.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10274322355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  XP_008220408.1 274 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 322
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-17269338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-11269326No hitNo description
PROSITE profilePS5088815.485271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16272339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7274322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGGHDSEDGG FQHRNEGSLN CPSSGMSTNP LPEKVSQMTM SSVSMFKPSN GADPFFGSGW  60
DPIVSLSQSD NFGGSSVVSH REFSNPPYPV ALENPGMSST SHLVQYPSDS SYVEMVPKLP  120
CFGSGSFSEM VGSFGLSECA QITNPGCVAN YNPNREGGTE RTSTIGAQSH DDHQISEEGA  180
LGSSPNGKRR KRVPESNSAF SPNKNAEGEI NKDLSGESSD YLKEQDEKKA IGEDNTAANL  240
RGKQMGKQAK ESSQSGDPKD SYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG  300
CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN IDIERILSKD ILNSRSGSGA  360
IFGFSPGISS SHPYPHGMFP GNLPSMPSSA PQAPQFPSLP QTVLDSELQG LFHMGFDSSS  420
AIDNLGQNGR LKSEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220408.10.0PREDICTED: transcription factor bHLH74 isoform X2
TrEMBLA0A251RBG40.0A0A251RBG4_PRUPE; Uncharacterized protein
STRINGXP_008220406.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-84bHLH family protein