PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008220212.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 222aa MW: 25427.2 Da PI: 10.3356

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008220212.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.6	2e-17	129	218	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f++++ k ++ ++l de+g +++ + ++++ l++GW++F+ a++L +gD +vF+l++ ++f +v XP_008220212.1 129 FVKPMLQSHVTGGFWLGLPIHFCNKNLPK--RDESVILVDEDGDEYQTVY--LANKRG--LSGGWRGFAIAHELVDGDALVFQLIRPKTF--KVY 215 89*******************999433..4557***********..555555..9**********************97888..888 PP EE- CS B3 96 vfr 98 ++r XP_008220212.1 216 IIR 218 877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-24	123	219	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.1E-20	124	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.24E-26	127	218	No hit	No description
Pfam	PF02362	2.5E-16	129	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.492	129	220	IPR003340	B3 DNA binding domain
SMART	SM01019	2.9E-25	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MVAAKLSYEE SRRQRMEENK KRMEALNLPQ LAQVLKAPSF PKPSPMKRAK PQTVEKQMVV 60 VRRSSRVANL PTPVYKEIAV DPLRMPRRHS NSKHRDFSNR VYASDEARAE ATERAEELES 120 GLGSDHRTFV KPMLQSHVTG GFWLGLPIHF CNKNLPKRDE SVILVDEDGD EYQTVYLANK 180 RGLSGGWRGF AIAHELVDGD ALVFQLIRPK TFKVYIIRVE RT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008220212.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220212.1	1e-165	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q69V36	2e-78	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	M5XAI5	1e-159	M5XAI5_PRUPE; Uncharacterized protein
STRING	XP_008220212.1	1e-165	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-69	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]