PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219255.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 634aa    MW: 67703 Da    PI: 8.012
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219255.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.8e-08200244144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r++W++ Ed  l+ av++ G g+W+ I r    g  Rt+ q+  rw
   XP_008219255.1 200 RKKWSEAEDFELIAAVQKCGEGNWANILRadFKG-DRTAGQLSQRW 244
                      789************************8721344.78888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-12193249IPR009057Homeodomain-like
PROSITE profilePS5129415.474195252IPR017930Myb domain
SuperFamilySSF466891.08E-11196249IPR009057Homeodomain-like
SMARTSM007178.3E-9199250IPR001005SANT/Myb domain
PfamPF002492.6E-6200244IPR001005SANT/Myb domain
CDDcd116601.65E-13201249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MFYHRRRYSH SLTKGRYTAT TVLALLQEVA HWPAAKIDWI RLVAKTSTGI SNAKEYQMLW  60
RHLAYREALV DKFDNGSQPL DDDSDLEYEL EAFPAVCGEA STEAAACVKV LIASGLPSDS  120
SHRNGTTVEA PLTINIPNGQ PSRTHENSEP TCSMQGKNIT VPVSVKKQPL PAATMSSVAT  180
ADGGDANGSA SNSMAPRKKR KKWSEAEDFE LIAAVQKCGE GNWANILRAD FKGDRTAGQL  240
SQRWAIIKKR NQELNLRGNS SGKLSEAQLA ARHSLSVALN MPNLTAKTIG TAGTNAHNKF  300
AREVATSNSL LTTGAKAEPQ SQQDLKPTKK PYQMELLGST TKSRITSKNT LTKPNCNDDD  360
IVRAIAVAAG ARIASPSDAA SLLKAAQAKN AVHIMPTGGS SIQSSLPRGM STHSEPHPNL  420
HMRTGLAGIT LSTPPPTDVT PNAVHPGSSK ALPLMSQHTP TNGTLLSKQI KGVSCSLDAK  480
LPSKQVVRTE EGSVIAELGC TPIVLAQDEA VISRNGQDEQ VKDDKVDSPN QKAELKILST  540
DAENPVSSLN IERDETHHKA VISVQGEQRQ SAKDNEVVCS LIGGGDPSAV DSSEKPSTTE  600
KQTDLLGTVT DGCNGKHVLS KEEAGIKING EHEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197201KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219255.10.0PREDICTED: uncharacterized protein LOC103319487 isoform X2
TrEMBLA0A251RH740.0A0A251RH74_PRUPE; Uncharacterized protein
STRINGXP_008219254.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.22e-69MYB_related family protein