PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219253.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 619aa    MW: 65780.8 Da    PI: 5.7174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219253.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-09208253145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                      r++W++ Ed+ l+ +v+++G g+W+ I r      Rt++q+  rw 
   XP_008219253.1 208 RKKWSEAEDLELIAGVRRYGEGNWANILRGDFkGERTANQLSQRWK 253
                      789************************98522359**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-14203260IPR009057Homeodomain-like
PROSITE profilePS5129416.229203260IPR017930Myb domain
SuperFamilySSF466895.76E-12204257IPR009057Homeodomain-like
SMARTSM007172.6E-8207258IPR001005SANT/Myb domain
PfamPF002491.3E-7208254IPR001005SANT/Myb domain
CDDcd116605.51E-14209257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MVEKPKDPEK SYITEEDTVN LLHRYQAANV LQLLQEVAHS QDVKIDWNRL VEKTSTGISN  60
AREYQMLWRH LAYSEAFVDN FDNGAQPVDD DSDLEHELEA FPAVSGEDST EAAACVKVLM  120
ASGLPSDSTH RSGATVEAPL TINIPNGQPS RTHQNSQPPC SMQGMNITVP VSVQKQPLLA  180
MTTSTGATAE GGDANGSASN NMAPRKKRKK WSEAEDLELI AGVRRYGEGN WANILRGDFK  240
GERTANQLSQ RWKYIRKHHH QDLNVGGNSS NKLSEAQLAT RHAMSLALNM PSITANTIGT  300
AGTNTHSKFG GTNATTNSVP STAAEEELQS QQGLKPAKPY QMGLLGSTSK SQLTSKKTLT  360
KPNSNTDGMV RATAVAAGAR IASPSDAASL LKAAQAKNAV HVLPTGGSSI QSSLPGSMRT  420
QPEPHPNLHY MHTGLAATPA STPLSTAVTP NATHPGSLKA LPQTSQHAPT NSTLLSKQIK  480
DVSCSLDSEP GCTPTEQVQD GAVISENGQN EEGQKDKVDS PDQKAELKNL STSAENLVGS  540
LDIKGDDTDN IAGIGVQSEE RQSAKDNETL CSLKGDDPFA ADSCENQSAS EQQIGLVSIV  600
GDGCNGKQVL GKEETGIKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219253.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219253.10.0PREDICTED: uncharacterized protein LOC103319486
TrEMBLM5XCP60.0M5XCP6_PRUPE; Uncharacterized protein
STRINGXP_008219253.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.19e-87MYB_related family protein