PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218724.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 308aa    MW: 35326.8 Da    PI: 5.0121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218724.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.6e-1510100299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      k+ ++  + + +rl++pk+f+++hg+    s ++ l+ + g + e+kl  r++ g+++++kGW eF k   L+ g  +vF+++g+s+f  +v +
  XP_008218724.1  10 MKTIMN-TNARDKRLRVPKTFMDKHGEH--LSDQIHLKLPGGSESEIKL--RRCAGEFWFEKGWPEFSKFCSLDFGSCLVFQYEGKSKF--HVLI 97 
                     555544.4555678***********955..8889***************..*********************************99999..***9 PP

                     E-S CS
              B3  97 frk 99 
                     f++
  XP_008218724.1  98 FDE 100
                     986 PP
2B337.64.1e-122323071898
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +p +f +++  +k  ++t +l     r W v+l    +++ y +++GW  F kan LkegD+++F+l+++++  l v +fr
  XP_008218724.1 232 VPGSFRKHFTPVK--NQTARLLV-GDRLWPVTL--IFHPQNYRFSAGWGAFEKANWLKEGDICIFELMDKKNLALEVNIFR 307
                     6777754444443..44566555.5699*****..66777799*************************9999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-214101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-215101IPR015300DNA-binding pseudobarrel domain
CDDcd100173.52E-14799No hitNo description
PROSITE profilePS5086311.4068101IPR003340B3 DNA binding domain
SMARTSM010191.5E-119101IPR003340B3 DNA binding domain
PfamPF023623.5E-1110100IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-17215307IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-17215307IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.828215308IPR003340B3 DNA binding domain
CDDcd100172.24E-12218307No hitNo description
SMARTSM010190.0028219308IPR003340B3 DNA binding domain
PfamPF023626.6E-10230307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAAKKIPHFM KTIMNTNARD KRLRVPKTFM DKHGEHLSDQ IHLKLPGGSE SEIKLRRCAG  60
EFWFEKGWPE FSKFCSLDFG SCLVFQYEGK SKFHVLIFDE SGTEIEYPIM PQIEGTDEEE  120
DDDMSIEEIL EIEDDEEDND KSVESLEIET DESSEILLID EDDDDDVKSV ESSEFFPLSQ  180
EKNRRKPRSS SKPSSSSSSS SSLRATVKAA NKFVPSHPFF KITLGPSRKA HVPGSFRKHF  240
TPVKNQTARL LVGDRLWPVT LIFHPQNYRF SAGWGAFEKA NWLKEGDICI FELMDKKNLA  300
LEVNIFRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1420630735141B3 domain-containing transcription factor VRN1
4i1k_B5e-1420630735141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218724.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218724.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A251RJP61e-179A0A251RJP6_PRUPE; Uncharacterized protein
STRINGXP_008218724.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-22B3 family protein