PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008218649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 932aa MW: 109998 Da PI: 7.0755 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.1 | 2.3e-06 | 234 | 253 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_008218649.1 234 CPFHLKTGACRFGQRCSRVH 253 ******************99 PP | |||||||
2 | zf-CCCH | 22.7 | 1.7e-07 | 363 | 390 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ C++G C+F+H+ XP_008218649.1 363 WKVAICGEYMKSRykNCSHGTACNFIHC 390 899************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.23 | 228 | 256 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4 | 229 | 255 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-4 | 233 | 253 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 8.4E-38 | 234 | 253 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 8.4E-38 | 253 | 273 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50102 | 9.9 | 260 | 360 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 1.0E-25 | 260 | 358 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
CDD | cd12540 | 3.00E-46 | 261 | 359 | No hit | No description |
SMART | SM00361 | 4.7E-6 | 280 | 356 | IPR003954 | RNA recognition motif domain, eukaryote |
PRINTS | PR01848 | 8.4E-38 | 289 | 304 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 3.74E-16 | 292 | 361 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 8.4E-38 | 317 | 339 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 8.4E-38 | 344 | 368 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 10.54 | 362 | 392 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.093 | 362 | 391 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-5 | 363 | 390 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 8.4E-38 | 382 | 394 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 932 aa Download sequence Send to blast |
MMDLADPVAK EGGEADVEPK MERLAEEKGT NRKEKRKAMK KMKRKQTRKE MALKEREEEE 60 AILNDPQELM KIKLMEQEEA ERSERERKLF EERERAWIEA MEIKRKKQIE EEEEEEERRM 120 KALEEEELSR KQQVENENDG NEVDDWDYIE EGPAEIIWQG NEIIVKKKRI KVPKRNTEQQ 180 SRKEDCDRPT SNPLPPQSEA FSDYKNSSMS AQQLIENVAQ QVPHFGTEQD KAHCPFHLKT 240 GACRFGQRCS RVHFYPDKSS TLLIKNMYNG PGLAWEQDEV LEHTDEEVER CYEEFYEDVH 300 TEFLKFGEII NFKVCRNGAF HLRGNVYIHY KSLDSAVLAH QSINGRYFAG KQISCEFINV 360 TRWKVAICGE YMKSRYKNCS HGTACNFIHC FRNPGGDYEW ADSDRPAPKY WVRKMVALFG 420 YSDADEKQMV EENFGQLRNS SKMTIADSER YGLRRSRSRG RDYSSFIGSG RRYDSEDYVL 480 KDAERQRHTG DDRHRGKTLD EDRCEENKNL KDYHCRKSRR SDTEFDRQLL DREEDRDRHH 540 GHTRKSSRQR NRDHKNKIYE TESDGDLSDR ARNRVAQHGY TRESSSQQRK GEFLDEYGDW 600 QNKNHEVDRY WSDRDKDRDA YHDKRKSSGH KRKVGSPDNH NDIENRAHDM DEEWSDSNSK 660 GGKHHSRRKR FGHISKASEF LNHRGRTTRS CSYELSDDLL ENDAERNLSH ARKRSKRLDE 720 VSDISDEDRF RTQNLEHRHD RLSLEMREAG ALVEKLKSDG THESSNLGQD GERYRSHDFD 780 IRYISDVHMD KQDRWEPEDG SVEIFHNSKT KAGSSESYDS GRPGPYNVRG ESSDFDSEDK 840 VGQEDQYESD KVARSKHRKS RRKSTHDDRK RDSENRSLCS SQSSHRNHSN RLEATDSSED 900 NNKSGRKHNQ KHHADHRSRD HKRDHKGRRL AT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 9e-30 | 225 | 389 | 9 | 167 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008218649.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008218649.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X2 | ||||
Swissprot | Q9SY74 | 0.0 | C3H5_ARATH; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A251RK36 | 0.0 | A0A251RK36_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218649.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-147 | C3H family protein |
Publications ? help Back to Top | |||
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